View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7741_low_35 (Length: 363)
Name: NF7741_low_35
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 36 - 353
Target Start/End: Complemental strand, 32347261 - 32346952
Alignment:
| Q |
36 |
gcatatgcatagcattttgtgaagtaagaatgaaagctagaaaaggaatgataaaaatatgcacacctcttgactcttgacttatgcacatttggggaca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32347261 |
gcatatgcatagcattttgtgaagtaagaatgaaagctagaaaaggaatgataaaaatatgcacacctcttgactcttgacttatgcacatttggggaca |
32347162 |
T |
|
| Q |
136 |
agaattgaacagcaaagacattatgaaatttcagcacctcttcttcctttgttcaaagcccaaaatgtgtcctttctcttctctcatgtgatgaacgagc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32347161 |
agaattgaacagcaaagacattatgaaatttcagcacct---cttcctttgttcaaagcccaaaatgtgtcct-----ttctctcatgtgatgaacgagc |
32347070 |
T |
|
| Q |
236 |
tggatctgacacccatgattgttgggtcgtctccagtataatccttaaaaaaccgtaccttacaaacttaggtttctaacttctagacattctaaatttg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32347069 |
tggatctgacacccatgattgttgggtcgtctccagtataatcctcaaaaaaccgtaccttacaaacttaggtttctaacttctagacattctaaatttg |
32346970 |
T |
|
| Q |
336 |
taacatctctcatttcat |
353 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32346969 |
taacatctctcatttcat |
32346952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University