View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7741_low_37 (Length: 361)
Name: NF7741_low_37
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 5546346 - 5546016
Alignment:
| Q |
18 |
ctatatatataacttcatattacattctccacaaacatacaccattattctcccattcttttttcttctatagaatcatatatacttgcaattatgagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5546346 |
ctatatatataacttcatattacattctccacaaacatacaccattattctcccattcttttttcttctatagaatcatatatacttgcaattatgagag |
5546247 |
T |
|
| Q |
118 |
ttgatgtatccgttagtgtgattgttcgagaattcgaagttaataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggacctagtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5546246 |
ttgatgtatccgttagtgtgattgttcgagaattcgaagttaataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggacctagtaa |
5546147 |
T |
|
| Q |
218 |
ccaactttctctcttcaccgacatgcttggtgaccccatttgcagggtccgccactccccttcttacctcatgctggtatatattcacaaaaatcattca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5546146 |
ccaactttctctcttcaccgacatgcttggtgaccccatttgcagggtccgccactcaccttcttacctcatgctggtatatattcacaaaaatcattca |
5546047 |
T |
|
| Q |
318 |
ttttcactattctattactttcattcttctc |
348 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
5546046 |
ttttcactattctattacttacattcttctc |
5546016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 39917998 - 39918108
Alignment:
| Q |
158 |
taataaagacaaagaaagagtagaagcagttgaaaggacatgtgaagttggacctagtaaccaactttctctcttcaccgacatgcttggtgaccccatt |
257 |
Q |
| |
|
||||||||| | |||||| || ||||||||||||| | ||||||||||||||| ||| | ||||| |||||||||||| ||| |||||||| ||| |
|
|
| T |
39917998 |
taataaagatagagaaagtgttgaagcagttgaaaaaatatgtgaagttggacccagtggtaagctttccctcttcaccgacttgcacggtgaccctatt |
39918097 |
T |
|
| Q |
258 |
tgcagggtccg |
268 |
Q |
| |
|
||||| ||||| |
|
|
| T |
39918098 |
tgcagagtccg |
39918108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University