View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_4 (Length: 734)

Name: NF7741_low_4
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_4
NF7741_low_4
[»] chr4 (21 HSPs)
chr4 (18-616)||(29134684-29135285)
chr4 (102-253)||(29135205-29135356)
chr4 (470-526)||(27531007-27531063)
chr4 (536-616)||(47928609-47928691)
chr4 (484-526)||(2467932-2467974)
chr4 (485-526)||(5889862-5889903)
chr4 (470-526)||(49867555-49867611)
chr4 (544-614)||(2870461-2870532)
chr4 (536-608)||(53959059-53959133)
chr4 (488-526)||(55812407-55812445)
chr4 (536-614)||(49867452-49867532)
chr4 (467-526)||(49074254-49074316)
chr4 (540-579)||(3653576-3653615)
chr4 (470-520)||(7783973-7784024)
chr4 (543-605)||(52244227-52244290)
chr4 (470-526)||(42000850-42000908)
chr4 (488-526)||(47928547-47928585)
chr4 (469-526)||(6848306-6848363)
chr4 (473-526)||(11327542-11327595)
chr4 (575-612)||(29441321-29441358)
chr4 (575-612)||(29444970-29445007)
[»] chr5 (14 HSPs)
chr5 (536-616)||(36571080-36571160)
chr5 (536-609)||(10939976-10940049)
chr5 (488-616)||(11088263-11088392)
chr5 (468-524)||(7670016-7670074)
chr5 (474-526)||(9156450-9156502)
chr5 (484-526)||(315175-315218)
chr5 (488-526)||(36571017-36571055)
chr5 (553-605)||(315082-315133)
chr5 (472-526)||(37687837-37687892)
chr5 (470-526)||(10940071-10940126)
chr5 (466-496)||(35801792-35801822)
chr5 (488-526)||(37523130-37523168)
chr5 (488-526)||(37563302-37563340)
chr5 (466-496)||(39868923-39868953)
[»] chr6 (5 HSPs)
chr6 (537-616)||(3011311-3011390)
chr6 (567-616)||(4149275-4149324)
chr6 (485-526)||(4295685-4295726)
chr6 (488-526)||(4149372-4149410)
chr6 (536-612)||(15119489-15119568)
[»] chr8 (10 HSPs)
chr8 (538-616)||(39192544-39192622)
chr8 (552-609)||(42884422-42884479)
chr8 (470-526)||(36396584-36396640)
chr8 (473-609)||(43448454-43448591)
chr8 (552-614)||(14755548-14755612)
chr8 (470-526)||(39333338-39333394)
chr8 (118-153)||(29468375-29468410)
chr8 (473-526)||(16912394-16912448)
chr8 (473-526)||(6893917-6893970)
chr8 (470-524)||(26991428-26991486)
[»] chr3 (14 HSPs)
chr3 (470-608)||(33091751-33091888)
chr3 (552-616)||(6786168-6786232)
chr3 (488-526)||(31295385-31295423)
chr3 (472-526)||(6786270-6786325)
chr3 (552-603)||(34245876-34245927)
chr3 (488-526)||(5971916-5971954)
chr3 (472-525)||(32827761-32827814)
chr3 (118-163)||(43059101-43059146)
chr3 (546-609)||(51295101-51295164)
chr3 (473-526)||(21657666-21657720)
chr3 (474-524)||(32959280-32959330)
chr3 (470-526)||(17229248-17229305)
chr3 (470-526)||(32739830-32739887)
chr3 (487-524)||(51295198-51295235)
[»] chr7 (13 HSPs)
chr7 (536-609)||(34790433-34790506)
chr7 (470-616)||(31442844-31442994)
chr7 (544-609)||(34590290-34590354)
chr7 (539-614)||(8806257-8806332)
chr7 (470-524)||(41161462-41161517)
chr7 (472-526)||(32228123-32228177)
chr7 (466-526)||(31172847-31172907)
chr7 (575-616)||(25529940-25529981)
chr7 (470-526)||(38604051-38604108)
chr7 (484-524)||(19738245-19738285)
chr7 (470-525)||(37087873-37087929)
chr7 (552-616)||(12809837-12809905)
chr7 (118-153)||(28283959-28283994)
[»] chr2 (23 HSPs)
chr2 (544-616)||(24401369-24401441)
chr2 (488-609)||(19983088-19983209)
chr2 (536-607)||(31079897-31079968)
chr2 (552-612)||(29148618-29148679)
chr2 (470-524)||(11476071-11476125)
chr2 (536-608)||(18832733-18832806)
chr2 (470-526)||(31079989-31080046)
chr2 (473-608)||(39096001-39096134)
chr2 (472-518)||(4587212-4587258)
chr2 (470-526)||(21501330-21501387)
chr2 (470-526)||(24402237-24402294)
chr2 (485-526)||(33259766-33259807)
chr2 (544-609)||(18647813-18647880)
chr2 (540-612)||(18832408-18832480)
chr2 (470-526)||(40896002-40896057)
chr2 (470-524)||(6128338-6128393)
chr2 (118-157)||(13018965-13019004)
chr2 (536-597)||(15318621-15318680)
chr2 (488-526)||(18647745-18647783)
chr2 (488-526)||(27578004-27578042)
chr2 (488-526)||(33058678-33058716)
chr2 (485-526)||(973574-973615)
chr2 (489-526)||(35015960-35015997)
[»] scaffold0148 (1 HSPs)
scaffold0148 (470-605)||(11414-11553)
[»] scaffold1206 (1 HSPs)
scaffold1206 (544-605)||(2171-2232)
[»] chr1 (15 HSPs)
chr1 (536-609)||(30714042-30714114)
chr1 (544-605)||(43049240-43049301)
chr1 (538-609)||(40901470-40901541)
chr1 (488-526)||(49292131-49292169)
chr1 (488-609)||(49750969-49751085)
chr1 (474-526)||(8318565-8318618)
chr1 (470-526)||(49826983-49827040)
chr1 (488-524)||(2713046-2713082)
chr1 (552-616)||(7332581-7332647)
chr1 (118-153)||(36526304-36526339)
chr1 (118-153)||(37923642-37923677)
chr1 (488-526)||(14726152-14726190)
chr1 (488-526)||(30714138-30714176)
chr1 (488-526)||(45563837-45563875)
chr1 (470-526)||(33299516-33299573)
[»] scaffold0057 (1 HSPs)
scaffold0057 (544-605)||(62625-62687)


Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 29135285 - 29134684
Alignment:
Q  18 actctccatacatagttggtactaagtttgcaactcaatatatcgtcaaccacttgcttacgatcaagttctatgtacacccttctaataatttaacaat 117  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  29135285 actctccatacataattggtattaagtttgtaactcaatatatcgtcaaccacttgcttacggtcaagttctatgtacacccttctaataatttaacaac 29135186  T
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaaatttagaaaagagtgaaaagactct--atacatagttggtgccaagtttgcaactcaagatatc 215  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||    
T  29135185 attatttatttgtctcctaacgaaacttatcttaaaatttagaaaagagtgaagagactctctatacatagttggtgccaaatttgcaactcaagatatc 29135086  T
Q  216 atcaaccattttgcttacggtcaagttttacgtacaccattgctaaattcatgctaccaaggcaagatgtgttcggtggtacaaattatcccttatcatt 315  Q
     | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29135085 gtgaaccattttgcttacggtcaagttttatgtacaccattgctaaattcatgctacctgggcaagatgtgttcggtggtacaaattatcccttatcatt 29134986  T
Q  316 tcataagcatatccacacatcattttcctcgctctgcaaaaattgttgcgtaaaaatattgcattttagagctcatgtttcccgttcgtgctagctaaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29134985 tcataagcatatccacacatcattttcctcgctctgcaaaaattgttgcgt-aaaatattgcattttagagctcatgtttcccgttcgtgctagctaaac 29134887  T
Q  416 ctatgnnnnnnnnncttcagggaatagcctcaaagtgttatcaatgcttgaggatgcgtttgttttaactttaaaaaaatagattttgagttaaaagaat 515  Q
    || ||          |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29134886 ctgtgttttttttctttcagggaatagcctcaaagtgttatcaatgcttgagggtgcgtttgttttaactttaaaaaaatagattttgagttaaaagaat 29134787  T
Q  516 ctagagattt--tnnnnnnnnntctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttcttta 613  Q
    ||||||||||            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29134786 ctagagatttaaaaaaaaaaaatctaaagctatttctttttgtttactatcataaaaatcattttttaaagatttaaatctcttacacttgagttcttta 29134687  T
Q  614 tgt 616  Q
    |||    
T  29134686 tgt 29134684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 29135356 - 29135205
Alignment:
Q  102 ctaataatttaacaatattatttgtttgtctcgtaatgaaacttatcttaaaatttagaaaagagtgaaaagactct--atacatagttggtgccaagtt 199  Q
    |||||| |||||| |  |||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||  ||||||| |||||   |||||    
T  29135356 ctaatattttaacgacgttatttgtttgtcttgtaatgaaacttatctt-aaatttaaaaaagagtgaagagactctccatacataattggtattaagtt 29135258  T
Q  200 tgcaactcaagatatcatcaaccattttgcttacggtcaagttttacgtacacc 253  Q
    || ||||||| ||||| |||||||  ||||||||||||||||| || |||||||    
T  29135257 tgtaactcaatatatcgtcaacca-cttgcttacggtcaagttctatgtacacc 29135205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 27531007 - 27531063
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  27531007 tgcgtttgttttaactttaaaaaaatagactttgtgttaaaagaatttagagatttt 27531063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 536 - 616
Target Start/End: Original strand, 47928609 - 47928691
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatca--ttttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    |||||| |||||||| ||||| ||||||||||||| |||  |||||| |||||||||| |||||||||||||| || ||||||    
T  47928609 tctaaaattatttctgtttgtctactatcataaaattcatttttttttaagatttgaagctcttacacttgagatccttatgt 47928691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 2467932 - 2467974
Alignment:
Q  484 ctttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  2467932 ctttaaaaaaatagattttgggttaaaagaatctagagatttt 2467974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 485 - 526
Target Start/End: Complemental strand, 5889903 - 5889862
Alignment:
Q  485 tttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  5889903 tttaaaaaaatagattttgtgttaaaagaatctagagatttt 5889862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 49867611 - 49867555
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | ||| ||||||| ||||||||||||||| |||||||||||||||    
T  49867611 tgcgtttgtttcagcttaaaaaaaaaagattttgagttaaatgaatctagagatttt 49867555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 2870532 - 2870461
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcatttttt-aaagatttgaatctcttacacttgagttctttat 614  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||| || ||||| ||||    
T  2870532 tatttctgtttgtttactatcataagaatcattttttaaaagatttaaagctcttacatttaagttccttat 2870461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 608
Target Start/End: Original strand, 53959059 - 53959133
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatca--ttttttaaagatttgaatctcttacacttgagtt 608  Q
    ||||||| ||||| | ||||||||||| |||||||||||  |||||| |||||||||| |||||||| |||||||    
T  53959059 tctaaagctatttttgtttgtttactaacataaaaatcatttttttttaagatttgaaactcttacatttgagtt 53959133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 55812407 - 55812445
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  55812407 aaaaaaatagattttgaattaaaagaatctagagatttt 55812445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 614
Target Start/End: Complemental strand, 49867532 - 49867452
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaat--cattttttaaagatttgaatctcttacacttgagttctttat 614  Q
    ||||||| ||||||| ||||||||||| |||||||||   ||||||||||||||||||   ||||||||| ||||| ||||    
T  49867532 tctaaagctatttctgtttgtttactaacataaaaataatattttttaaagatttgaagtacttacacttaagttccttat 49867452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 526
Target Start/End: Complemental strand, 49074316 - 49074254
Alignment:
Q  467 ggatgcgtttgttttaacttt---aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||| | ||||   |||||||||||||||| ||||||||||| ||||||||||    
T  49074316 ggatgcgtttgtttcagcttttaaaaaaaaatagattttgggttaaaagaatttagagatttt 49074254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 579
Target Start/End: Original strand, 3653576 - 3653615
Alignment:
Q  540 aagttatttctttttgtttactatcataaaaatcattttt 579  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  3653576 aagttatttctgtttgttcactatcataaaaatcattttt 3653615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 7783973 - 7784024
Alignment:
Q  470 tgcgtttgttttaactttaa-aaaaatagattttgagttaaaagaatctaga 520  Q
    ||||||||||| | |||||| |||||||||||||| ||||||||||||||||    
T  7783973 tgcgtttgtttgagctttaagaaaaatagattttgtgttaaaagaatctaga 7784024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 605
Target Start/End: Complemental strand, 52244290 - 52244227
Alignment:
Q  543 ttatttctttttgtttactatcataaaaatc-attttttaaagatttgaatctcttacacttga 605  Q
    |||||||||||||||  |||||||||||||| ||||||| |||| ||||| |||||| ||||||    
T  52244290 ttatttctttttgttccctatcataaaaatcaatttttttaagacttgaagctcttatacttga 52244227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 42000850 - 42000908
Alignment:
Q  470 tgcgtttgttttaactttaaa-aaaataga-ttttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||||| |||||||| ||||| |||| || ||||||||||||||    
T  42000850 tgcgtttgttttaactttaaagaaaatagatttttgtgttagaaaaatctagagatttt 42000908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 47928547 - 47928585
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  47928547 aaaaaaatagaatttgagttaaaagaatttagagatttt 47928585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 526
Target Start/End: Original strand, 6848306 - 6848363
Alignment:
Q  469 atgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||| ||||||||| |||||||||||||||||||  |||| || ||| ||||||||||    
T  6848306 atgcctttgttttagctttaaaaaaatagattttatgttagaaaaatttagagatttt 6848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 11327595 - 11327542
Alignment:
Q  473 gtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||| | ||||||||||||| ||||||  |||||||||| ||||||||||    
T  11327595 gtttgtttcagctttaaaaaaataaattttgttttaaaagaatttagagatttt 11327542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 29441358 - 29441321
Alignment:
Q  575 ttttttaaagatttgaatctcttacacttgagttcttt 612  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  29441358 tttttttaagatttgaaactcttacacttgagttcttt 29441321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 29445007 - 29444970
Alignment:
Q  575 ttttttaaagatttgaatctcttacacttgagttcttt 612  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  29445007 tttttttaagatttgaaactcttacacttgagttcttt 29444970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 536 - 616
Target Start/End: Original strand, 36571080 - 36571160
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  36571080 tctaaagctatttttgtttctttactatcataaaaatcattttttaaagatttgaagctcttacacttgagttccttatgt 36571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 10940049 - 10939976
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  10940049 tctaaagctatttctgtttgtttactatcataaaaatcatttttaaaagatttgaagctcttacacctgagttc 10939976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 488 - 616
Target Start/End: Original strand, 11088263 - 11088392
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaa-tctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcataaaa-atcattttttaaaga 585  Q
    |||||||||||||||||||||||| |  ||||||||||||         ||||||| ||||||| ||||||||||||||||||| |||||||||  ||||    
T  11088263 aaaaaaatagattttgagttaaaaaatctctagagattttaaaaaaaa-tctaaagctatttctatttgtttactatcataaaaaatcatttttctaaga 11088361  T
Q  586 tttgaatctcttacacttgagttctttatgt 616  Q
    ||| || ||||||||||||||||||||||||    
T  11088362 tttaaagctcttacacttgagttctttatgt 11088392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 7670074 - 7670016
Alignment:
Q  468 gatgcgtttgttttaactttaaaaa--aatagattttgagttaaaagaatctagagatt 524  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||    
T  7670074 gatgcgtttgttttaactttaaaaagaaatagattttgtgttaaaagaatttagagatt 7670016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 9156450 - 9156502
Alignment:
Q  474 tttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||| | ||||||||||| |||||||| ||||||||||||||||||||||    
T  9156450 tttgtttcagctttaaaaaaaaagattttgtgttaaaagaatctagagatttt 9156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 484 - 526
Target Start/End: Complemental strand, 315218 - 315175
Alignment:
Q  484 ctttaaaaaaa-tagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  315218 ctttaaaaaaagtagattttgagttaaaagaatctagagatttt 315175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 36571017 - 36571055
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36571017 aaaaaaatagattttgaattaaaagaatctagagatttt 36571055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 605
Target Start/End: Complemental strand, 315133 - 315082
Alignment:
Q  553 ttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttga 605  Q
    |||||||||||||||||||||||||||| ||||||| ||  ||||||||||||    
T  315133 ttgtttactatcataaaaatcatttttt-aagatttaaagttcttacacttga 315082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 37687837 - 37687892
Alignment:
Q  472 cgtttgttttaactttaaaa-aaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||| | |||||||| |||||||||||  ||||||||||||||||||||||    
T  37687837 cgtttgtttcagctttaaaaaaaatagattttatgttaaaagaatctagagatttt 37687892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 10940126 - 10940071
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaa-tagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | ||||||||||| ||||||  ||||||||||||||||||||||||    
T  10940126 tgcgtttgtttcagctttaaaaaaaatagatt--gagttaaaagaatctagagatttt 10940071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 496
Target Start/End: Complemental strand, 35801822 - 35801792
Alignment:
Q  466 aggatgcgtttgttttaactttaaaaaaata 496  Q
    |||||||||||||||||||||||||||||||    
T  35801822 aggatgcgtttgttttaactttaaaaaaata 35801792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 37523130 - 37523168
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  37523130 aaaaaaatagattttatgttaaaagaatctagagatttt 37523168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 37563302 - 37563340
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  37563302 aaaaaaatagattttatgttaaaagaatctagagatttt 37563340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 39868923 - 39868953
Alignment:
Q  466 aggatgcgtttgttttaactttaaaaaaata 496  Q
    |||||||||||||||||||||||||||||||    
T  39868923 aggatgcgtttgttttaactttaaaaaaata 39868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 3011311 - 3011390
Alignment:
Q  537 ctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    |||||| ||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  3011311 ctaaagctatttttgtttgtctactatcataaaaatcattttttaaagatttgaagctcttacacttgagttccttatgt 3011390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 616
Target Start/End: Complemental strand, 4149324 - 4149275
Alignment:
Q  567 aaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  4149324 aaaaatcatttttgaaagatttgaaactcttacacttgagttccttatgt 4149275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 4295685 - 4295726
Alignment:
Q  485 tttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  4295685 tttaaaaaaatagattttatgttaaaagaatctagagatttt 4295726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 4149410 - 4149372
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  4149410 aaaaaaatagagtttgagttaaaagaatctagagttttt 4149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 612
Target Start/End: Original strand, 15119489 - 15119568
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcatttttta---aagatttgaatctcttacacttgagttcttt 612  Q
    ||||||||||||| | ||||||||| | ||||||||| |||||||    | |||||||| |||||||| |||||||||||    
T  15119489 tctaaagttatttatgtttgtttacaaacataaaaataattttttttttatgatttgaagctcttacatttgagttcttt 15119568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 538 - 616
Target Start/End: Complemental strand, 39192622 - 39192544
Alignment:
Q  538 taaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||    
T  39192622 taaagctatttctgtttgtttactatcataaaaatcaattttttaagatttgaagctcttacacttgagttccttatgt 39192544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 609
Target Start/End: Complemental strand, 42884479 - 42884422
Alignment:
Q  552 tttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  42884479 tttgcttactatcataaaaatcatttttttaagatttgaaactcttacaattgagttc 42884422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 36396584 - 36396640
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  36396584 tgcggttgtttcagctttaaaaaaatagattttgtgttaaaagaatctagagatttt 36396640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 609
Target Start/End: Complemental strand, 43448591 - 43448454
Alignment:
Q  473 gtttgttttaactttaaaaaa-atagattttgagttaaaagaatctagagattttnnnnnnnnntctaaag-ttatttctttttgtttactatcataaaa 570  Q
    |||||||||| |||||||||| ||||||| |||||||||| |||||||| |||||         ||| ||| |||||||| |||||||||||| ||||||    
T  43448591 gtttgttttagctttaaaaaatatagattatgagttaaaaaaatctagaaattttaaaaaaa--tctgaagcttatttctgtttgtttactattataaaa 43448494  T
Q  571 atca-ttttttaaagatttgaatctcttacacttgagttc 609  Q
    || | |||||| |||||||||| |||||||| ||||||||    
T  43448493 attattttttttaagatttgaagctcttacatttgagttc 43448454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 614
Target Start/End: Complemental strand, 14755612 - 14755548
Alignment:
Q  552 tttgtttactatcataaaaatcatt--ttttaaagatttgaatctcttacacttgagttctttat 614  Q
    |||||||||||||| ||||||||||  |||| ||||||||||  |||||||||||||||| ||||    
T  14755612 tttgtttactatcacaaaaatcatttttttttaagatttgaagttcttacacttgagttccttat 14755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 39333394 - 39333338
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| |||||||||||||| ||||||  |||||||||| ||||| |||||    
T  39333394 tgcgtttgtttcaactttaaaaaaattgattttttgttaaaagaagctagaaatttt 39333338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 29468375 - 29468410
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaa 153  Q
    |||||||||||||||| |||||||||||||||||||    
T  29468375 attatttgtttgtctcataatgaaacttatcttaaa 29468410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 16912394 - 16912448
Alignment:
Q  473 gtttgttttaactttaaaaaaatag-attttgagttaaaagaatctagagatttt 526  Q
    |||||||| |||||| ||||||| | |||||| ||||||||||||||||||||||    
T  16912394 gtttgtttcaacttttaaaaaattggattttgggttaaaagaatctagagatttt 16912448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 6893970 - 6893917
Alignment:
Q  473 gtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||| | |||||||||||||| ||||  ||| ||||||||||||||||||    
T  6893970 gtttgtttcagctttaaaaaaatagtttttatgttgaaagaatctagagatttt 6893917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 26991486 - 26991428
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaat----agattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||||||| |||||||     |||||||| ||||||||||||||||||||    
T  26991486 tgcgtttgttttaacttaaaaaaaaagaaaagattttgtgttaaaagaatctagagatt 26991428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 470 - 608
Target Start/End: Original strand, 33091751 - 33091888
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcataaa 569  Q
    ||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||         ||||| | ||||| | ||||||||||||||| ||    
T  33091751 tgcgtttgtttcagcttaaaaaaagtagattttgagttaaaagaatctagagatttt-tagaaaaatctaatgctatttatgtttgtttactatcatgaa 33091849  T
Q  570 aatcattttttaaagatttgaatctcttacacttgagtt 608  Q
    ||||||||||| |||||||||| ||||||  ||||||||    
T  33091850 aatcatttttttaagatttgaaactcttatgcttgagtt 33091888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 6786232 - 6786168
Alignment:
Q  552 tttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  6786232 tttgtttactatcataaaaatcatttttgaaagatttgaagctcttacacttgagttccttatgt 6786168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 31295423 - 31295385
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31295423 aaaaaaatagattttgagttaaaagaatctagagatttt 31295385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 6786325 - 6786270
Alignment:
Q  472 cgtttgttttaactttaaaaaaa-tagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||| | ||||||||||| |||||||||||||| |||||||||||||||||    
T  6786325 cgtttgtttcagctttaaaaaaaatagattttgagttacaagaatctagagatttt 6786270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 34245876 - 34245927
Alignment:
Q  552 tttgtttactatcataaaaatcattttttaaagatttgaatctcttacactt 603  Q
    ||||||||||||||||||||||||||||| ||||| |||  |||||||||||    
T  34245876 tttgtttactatcataaaaatcatttttttaagatatgatcctcttacactt 34245927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 5971954 - 5971916
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  5971954 aaaaaaatagattttgatttaaaagaatctagagatttt 5971916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 32827814 - 32827761
Alignment:
Q  472 cgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagattt 525  Q
    ||||||||| | |||||||||||||||||||| |||||||| || |||||||||    
T  32827814 cgtttgtttcagctttaaaaaaatagattttgtgttaaaaggatttagagattt 32827761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 43059146 - 43059101
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaaatttagaaaa 163  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||    
T  43059146 attatttgtttgtcttataatgaaacttatcttaaaattttgaaaa 43059101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 51295164 - 51295101
Alignment:
Q  546 tttctttttgtttactatcataaaaatcatt-ttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||| ||||||||||||||||||||||||| |||| ||||  |||| |||||||||||||||||    
T  51295164 tttctgtttgtttactatcataaaaatcattttttttaaga-ctgaagctcttacacttgagttc 51295101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 21657720 - 21657666
Alignment:
Q  473 gtttgttttaactttaaaaa-aatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||| ||||||||||| |||| ||||||||||||||| ||||||| |||||    
T  21657720 gtttgtttcaactttaaaaataataaattttgagttaaaaggatctagaaatttt 21657666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 32959330 - 32959280
Alignment:
Q  474 tttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||||||||||| |||||||| || |||||||| || |||||    
T  32959330 tttgttttaactttaaaaaaaaagattttgtgtaaaaagaatttaaagatt 32959280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 17229305 - 17229248
Alignment:
Q  470 tgcgtttgttttaacttt-aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||||| |||||||||||||||| |||| || ||| |||| |||||    
T  17229305 tgcgtttgttttaacttttaaaaaaatagattttgtgttagaaaaatatagatatttt 17229248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 32739887 - 32739830
Alignment:
Q  470 tgcgtttgttttaactttaa-aaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||| |||||| ||||||||||||||  ||| || ||||||||||||||    
T  32739887 tgcgtttgttttagctttaagaaaaatagattttgtattagaaaaatctagagatttt 32739830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 51295235 - 51295198
Alignment:
Q  487 taaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  51295235 taaataaatagattttgggttaaaagaatctagagatt 51295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 34790506 - 34790433
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||    
T  34790506 tctaaagctatttctgtttgtttactaacataaaaatcatttttttaagatttgaagctcttacacttgagttc 34790433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 470 - 616
Target Start/End: Original strand, 31442844 - 31442994
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaata--gattttgagttaaaagaatctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcata 567  Q
    ||||||||||| | ||||||||||| |  ||||||||||||||||||||||||||||||         ||||||| ||||| | |||||||||||| |||    
T  31442844 tgcgtttgtttcagctttaaaaaaaaaaagattttgagttaaaagaatctagagattttttaaaaaaatctaaagctatttttgtttgtttactataata 31442943  T
Q  568 aaaatcat--tttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||||||  |||||  ||| |||||  |||||||||||||||| ||||||    
T  31442944 aaaatcattatttttttagaattgaagttcttacacttgagttccttatgt 31442994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 609
Target Start/End: Complemental strand, 34590354 - 34590290
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  34590354 tatttctgtttgtttactatcataaaaatcatttttt-aagatttgaagctcttacacttgagttc 34590290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 614
Target Start/End: Original strand, 8806257 - 8806332
Alignment:
Q  539 aaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttat 614  Q
    |||| ||||||| ||||||||||| ||||||||| ||||||| || |||| || ||||||||||||||||| ||||    
T  8806257 aaagctatttctatttgtttactaacataaaaattatttttttaaaattttaaactcttacacttgagttccttat 8806332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 41161517 - 41161462
Alignment:
Q  470 tgcgtttgttttaactttaaaaa-aatagattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  41161517 tgcgtttgttttagctttaaaaagaatagattttgtgttaaaagaatctagagatt 41161462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 32228123 - 32228177
Alignment:
Q  472 cgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||    
T  32228123 cgtttgtttcaactttaaaaaaatagattttatgttaaaagaatttagagatttt 32228177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 526
Target Start/End: Complemental strand, 31172907 - 31172847
Alignment:
Q  466 aggatgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||| | |||||||||||||||||||  ||||||| |||||| |||||||    
T  31172907 aggatgcgtttgtttcagctttaaaaaaatagattttatgttaaaataatctatagatttt 31172847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 616
Target Start/End: Complemental strand, 25529981 - 25529940
Alignment:
Q  575 ttttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  25529981 ttttttaaagatttgaagctcttacacttgagttccttatgt 25529940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 38604108 - 38604051
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaa-tagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | ||||||||||| ||||||||| || |||||||||||||||||||    
T  38604108 tgcgtttgtttcagctttaaaaaaaatagattttgtgtcaaaagaatctagagatttt 38604051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 524
Target Start/End: Original strand, 19738245 - 19738285
Alignment:
Q  484 ctttaaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  19738245 ctttacaaaaatagattttgtgttaaaagaatctagagatt 19738285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 37087929 - 37087873
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaa-tagattttgagttaaaagaatctagagattt 525  Q
    ||||||||||| ||||||||||||| ||||||||   ||||||||||||||||||||    
T  37087929 tgcgtttgtttcaactttaaaaaaaatagattttatattaaaagaatctagagattt 37087873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 12809837 - 12809905
Alignment:
Q  552 tttgtttactatcataaaaatcatttttta----aagatttgaatctcttacacttgagttctttatgt 616  Q
    |||||||| ||||||||||||||||||||     |||||||||| || ||||| |||||||||||||||    
T  12809837 tttgtttagtatcataaaaatcatttttttttttaagatttgaagctattacatttgagttctttatgt 12809905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 28283994 - 28283959
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaa 153  Q
    |||||||||||||||| |||||||||||||||||||    
T  28283994 attatttgtttgtctcctaatgaaacttatcttaaa 28283959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 544 - 616
Target Start/End: Complemental strand, 24401441 - 24401369
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttctttatgt 616  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| ||||||    
T  24401441 tatttctgtttgtttactatcataaaaatcatttttataagatttgaaactcttacacttgagttccttatgt 24401369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 488 - 609
Target Start/End: Original strand, 19983088 - 19983209
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcataaaaatcatttt-ttaaagat 586  Q
    |||||||||||||||||||||||| ||| ||||||||||         ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||    
T  19983088 aaaaaaatagattttgagttaaaaaaatttagagatttttaaaaaaa-tctaaagttatttctgtttgtttactatcataaaaatcattttcttaaaaat 19983186  T
Q  587 ttgaatctcttacacttgagttc 609  Q
     |||| | |||||| ||||||||    
T  19983187 atgaaacccttacaattgagttc 19983209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 536 - 607
Target Start/End: Complemental strand, 31079968 - 31079897
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagt 607  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  31079968 tctaaagctatttatgtttgtttactatcataaaaatcattttttaaagatttgaagttcttatacttgagt 31079897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 612
Target Start/End: Original strand, 29148618 - 29148679
Alignment:
Q  552 tttgtttactatcataaaaatcatttttta-aagatttgaatctcttacacttgagttcttt 612  Q
    |||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  29148618 tttgtttactattataaaaatcattttttttaagatttgaagctcttacacttgagttcttt 29148679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 11476071 - 11476125
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||    
T  11476071 tgcgtttgttttagctttaaaaaaataaattttgtgttaaaataatctagagatt 11476125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 608
Target Start/End: Complemental strand, 18832806 - 18832733
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcatttttta-aagatttgaatctcttacacttgagtt 608  Q
    ||||||| ||||| | ||||| ||||||||||||||| |||||||  |||||||||| ||||||||||||||||    
T  18832806 tctaaagctatttatgtttgtctactatcataaaaattattttttttaagatttgaagctcttacacttgagtt 18832733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 31080046 - 31079989
Alignment:
Q  470 tgcgtttgttttaactttaaa-aaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||    
T  31080046 tgcgtttgtttcagctttaaagaaaatagattttgagttaaaagaatgtagagatttt 31079989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 608
Target Start/End: Complemental strand, 39096134 - 39096001
Alignment:
Q  473 gtttgttttaactttaaaaaa-atagattttgagttaaaagaatctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcataaaaa 571  Q
    |||||||| |||||||||||| |||||||||| ||||||||||| | ||||||||         | ||||  ||||||| ||||||||||||||||||||    
T  39096134 gtttgtttcaactttaaaaaatatagattttg-gttaaaagaatttggagatttttaaaaaaatt-taaaactatttctatttgtttactatcataaaaa 39096037  T
Q  572 tcattttttaaagatttgaatctcttacacttgagtt 608  Q
    | ||||||| ||||||| || ||||||||||| ||||    
T  39096036 ttatttttt-aagatttaaagctcttacactttagtt 39096001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 518
Target Start/End: Original strand, 4587212 - 4587258
Alignment:
Q  472 cgtttgttttaactttaaaaaaatagattttgagttaaaagaatcta 518  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  4587212 cgtttgtttcagcttaaaaaaaatagattttgagttaaaagaatcta 4587258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 21501330 - 21501387
Alignment:
Q  470 tgcgtttgttttaactttaaaa-aaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| |||||||||| |||||||||||| || ||| |||||||||||||||    
T  21501330 tgcgtttgtttcaactttaaaaaaaatagattttgtgtcaaaggaatctagagatttt 21501387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 24402294 - 24402237
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaata-gattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||| ||||||||||| | ||||||||||| ||||||| ||||||||||    
T  24402294 tgcgtttgttttatctttaaaaaaaaaagattttgagttgaaagaatttagagatttt 24402237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 33259766 - 33259807
Alignment:
Q  485 tttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  33259766 tttaaaaaaatagattttatgttaaaagaatctagagatttt 33259807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 18647813 - 18647880
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcatttttta--aagatttgaatctcttacacttgagttc 609  Q
    ||||||| |||| |||||||||||| | |||||||||   |||||||||| |||||||||||||||||    
T  18647813 tatttctatttgcttactatcataacagtcatttttttttaagatttgaagctcttacacttgagttc 18647880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 18832408 - 18832480
Alignment:
Q  540 aagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttcttt 612  Q
    ||||||||||| ||| |||||||||| |||||| ||||||| ||||||||||   ||| ||||||| ||||||    
T  18832408 aagttatttctatttatttactatcacaaaaattatttttttaagatttgaagtacttgcacttgatttcttt 18832480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 40896002 - 40896057
Alignment:
Q  470 tgcgtttgttttaactttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||| ||||||||||| | || ||| ||||||||||||||||||||||    
T  40896002 tgcgtttgttttagctttaaaaaaa-atatattgtgttaaaagaatctagagatttt 40896057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 6128393 - 6128338
Alignment:
Q  470 tgcgtttgttttaacttt-aaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||||||| |||||    
T  6128393 tgcgtttgttttatcttttaaaaaaataaattttgtgttaaaagaatctaaagatt 6128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 13018965 - 13019004
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaaattt 157  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  13018965 attatttgattgtctcctaatgaaacttatcttaaaattt 13019004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 536 - 597
Target Start/End: Complemental strand, 15318680 - 15318621
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctctt 597  Q
    ||||||| ||||||| |||||||| ||||||||||||  | ||||||||||||||| |||||    
T  15318680 tctaaagctatttctgtttgtttagtatcataaaaat--tattttaaagatttgaagctctt 15318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Original strand, 18647745 - 18647783
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  18647745 aaaaaaatagattttgagttacaaaaatctagagatttt 18647783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 27578042 - 27578004
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  27578042 aaaaaaaaagattttgggttaaaagaatctagagatttt 27578004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 33058716 - 33058678
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||||||||||||||| || |||||||    
T  33058716 aaaaaaatagattttgagttaaaagaatataaagatttt 33058678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 526
Target Start/End: Complemental strand, 973615 - 973574
Alignment:
Q  485 tttaaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||| |||  |||||||||||||||||    
T  973615 tttaaaaaaatagattttgtgttggaagaatctagagatttt 973574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 526
Target Start/End: Complemental strand, 35015997 - 35015960
Alignment:
Q  489 aaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  35015997 aaaaaatagattttgagttaaaaaaatttagagatttt 35015960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 11414 - 11553
Alignment:
Q  470 tgcgtttgttttaacttt---aaaaaaatagattttgagttaaaagaatctagagattttnnnnnnnnn-tctaaagttatttctttttgtttactatca 565  Q
    ||||||||||| ||||||   |||||||||||||| | |||||||||||| |||||||||          ||||||||||||||| ||||||||||| ||    
T  11414 tgcgtttgtttcaacttttaaaaaaaaatagatttagtgttaaaagaatcaagagattttttaaaaaaaatctaaagttatttctatttgtttactaaca 11513  T
Q  566 taaaaatcattttttaaagatttgaatctcttacacttga 605  Q
    ||||||||||||||| | ||||| || |||||||||||||    
T  11514 taaaaatcatttttttaggatttaaaactcttacacttga 11553  T

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Target: scaffold1206 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1206
Description:

Target: scaffold1206; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 2232 - 2171
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttga 605  Q
    ||||||| ||||||||| || |||||||||||||||| |||||||||| |||||| ||||||    
T  2232 tatttctgtttgtttaccattataaaaatcatttttttaagatttgaaactcttatacttga 2171  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 30714114 - 30714042
Alignment:
Q  536 tctaaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||||| ||||||  ||| |||| || |||||||||||| |||||| ||||||||||||||||||||||||||    
T  30714114 tctaaagctatttcagtttatttaataacataaaaatcatgttttaa-gatttgaatctcttacacttgagttc 30714042  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 43049301 - 43049240
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttga 605  Q
    ||||||| ||| || |||||||||||||||| ||||| |||||||||| |||||||||||||    
T  43049301 tatttctgttttttaactatcataaaaatcacttttttaagatttgaagctcttacacttga 43049240  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 538 - 609
Target Start/End: Complemental strand, 40901541 - 40901470
Alignment:
Q  538 taaagttatttctttttgtttactatcataaaaatcattttttaaagatttgaatctcttacacttgagttc 609  Q
    ||||| ||||| | |||| |||||||||||||||||||||||| |  ||||||| |||||| ||||||||||    
T  40901541 taaagctatttatgtttgcttactatcataaaaatcatttttttagaatttgaagctcttatacttgagttc 40901470  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 49292169 - 49292131
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  49292169 aaaaaaatagattttgtgttaaaagaatctagagatttt 49292131  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 609
Target Start/End: Original strand, 49750969 - 49751085
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagattttnnnnnnnnntctaaagttatttctttttgtttactatcataaaaatcattttttaaagatt 587  Q
    |||||||||||||||| ||||||||||||||| ||||||         ||||||| ||||  | |||||||||||||||||||    |||||| ||||||    
T  49750969 aaaaaaatagattttgggttaaaagaatctagggatttt---taaaaatctaaagctatt--tatttgtttactatcataaaatgattttttttaagatt 49751063  T
Q  588 tgaatctcttacacttgagttc 609  Q
    | ||||||||||| ||||||||    
T  49751064 ttaatctcttacatttgagttc 49751085  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 8318565 - 8318618
Alignment:
Q  474 tttgttttaactttaaaa-aaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||| |||||||||| |||||||||||| || |||||||||||||||||||    
T  8318565 tttgtttcaactttaaaaaaaatagattttgtgtcaaaagaatctagagatttt 8318618  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 49826983 - 49827040
Alignment:
Q  470 tgcgtttgttttaactttaaaa-aaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | |||||||| |||||||||||| |||||||||||||| |||||||    
T  49826983 tgcgtttgtttcagctttaaaaaaaatagattttgggttaaaagaatctaaagatttt 49827040  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 2713046 - 2713082
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatt 524  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2713046 aaaaaaatagattttgagttaaaagtatctagagatt 2713082  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 616
Target Start/End: Original strand, 7332581 - 7332647
Alignment:
Q  552 tttgtttactatcataaaaatcatttttta--aagatttgaatctcttacacttgagttctttatgt 616  Q
    |||||||| ||| |||||||| |||||||   |||||||||| |||||||||||||||| |||||||    
T  7332581 tttgtttattattataaaaataatttttttttaagatttgaagctcttacacttgagttttttatgt 7332647  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 36526304 - 36526339
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaa 153  Q
    |||||||||||||||| |||||||||||||||||||    
T  36526304 attatttgtttgtctcctaatgaaacttatcttaaa 36526339  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 37923642 - 37923677
Alignment:
Q  118 attatttgtttgtctcgtaatgaaacttatcttaaa 153  Q
    |||||||||||||||| |||||||||||||||||||    
T  37923642 attatttgtttgtctcctaatgaaacttatcttaaa 37923677  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 14726190 - 14726152
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  14726190 aaaaaaatagattttgtgttaaaagaatctagaaatttt 14726152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 30714176 - 30714138
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||||||||||||||| || |||||||    
T  30714176 aaaaaaatagattttgagttaaaagaatataaagatttt 30714138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 526
Target Start/End: Complemental strand, 45563875 - 45563837
Alignment:
Q  488 aaaaaaatagattttgagttaaaagaatctagagatttt 526  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  45563875 aaaaaaatagattttgtgttaaaaaaatctagagatttt 45563837  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 33299516 - 33299573
Alignment:
Q  470 tgcgtttgttttaactttaaaa-aaatagattttgagttaaaagaatctagagatttt 526  Q
    ||||||||||| | |||||||| |||||||||||| ||| ||| ||||||||||||||    
T  33299516 tgcgtttgtttcagctttaaaaaaaatagattttgtgttcaaaaaatctagagatttt 33299573  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 62625 - 62687
Alignment:
Q  544 tatttctttttgtttactatcataaaaatcatttt-ttaaagatttgaatctcttacacttga 605  Q
    ||||||| ||||||||| ||||||||||||||||| || | ||||| || |||||||||||||    
T  62625 tatttctgtttgtttaccatcataaaaatcattttgtttatgatttaaaactcttacacttga 62687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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