View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_44 (Length: 331)

Name: NF7741_low_44
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_44
NF7741_low_44
[»] chr5 (3 HSPs)
chr5 (180-316)||(24894081-24894217)
chr5 (5-82)||(24893906-24893983)
chr5 (180-297)||(24999047-24999164)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 180 - 316
Target Start/End: Original strand, 24894081 - 24894217
Alignment:
Q  180 ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt 279  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24894081 ggagctaaatctctcagtatatcccacttcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagacggactaactcctt 24894180  T
Q  280 taataccactgctgccggaattgagttcggacgaaga 316  Q
    |||||||||||||||||||||||||||||||||||||    
T  24894181 taataccactgctgccggaattgagttcggacgaaga 24894217  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 24893906 - 24893983
Alignment:
Q  5 atcccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893906 atcccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc 24893983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 24999047 - 24999164
Alignment:
Q  180 ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt 279  Q
    ||||| ||||||||||| ||||||||||| |||||| ||||||||||| ||||||||  ||||||||| |||||||||||||| |  || |||| ||| |    
T  24999047 ggagcaaaatccctcagaatatcccacgttgaacacgtgtcatccacaacagaaacccgaacccctggcggcggcttaagcatcggcggtctaattccct 24999146  T
Q  280 taataccactgctgccgg 297  Q
    ||||||||| ||||||||    
T  24999147 taataccaccgctgccgg 24999164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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