View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_45 (Length: 330)
Name: NF7741_low_45
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 10343341 - 10343050
Alignment:
| Q |
23 |
tagtactattcatttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
122 |
Q |
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| T |
10343341 |
tagtactattcatttgagactgagtcgcagtgctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
10343242 |
T |
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| Q |
123 |
actgttacgactattgttccgccattatgttgatgaaattgaagacatgttgttgacatcgtcttgatgaggatggagagtggggggaattacgcttctt |
222 |
Q |
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| T |
10343241 |
actgttaccactattgttccatcattatgttaatgaaattgaagacatgttgttgacatcgtcttgatgaggatggaga--tgggggaattacgcttctt |
10343144 |
T |
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| Q |
223 |
ctgctagagattccaccagcttgtgaacattaactata------acctctaagtgatctacttctcttaatcaataaattatcatgtcactgat |
310 |
Q |
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| T |
10343143 |
ctgctggagattccactagcttgtgaacattaactataactctcacctctaagtgatctacttctcttaatcaataaattatcatgtcactgat |
10343050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 249
Target Start/End: Original strand, 10181533 - 10181717
Alignment:
| Q |
74 |
cagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacgactattgttccgccattatgttgatgaaatt---gaagacat |
170 |
Q |
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| T |
10181533 |
cagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgatatagtacctccatgaagttgatgaaactaaagaagacat |
10181632 |
T |
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| Q |
171 |
gttg------ttgacatcgtcttgatgaggatggagagtggggggaattacgcttcttctgctagagattccaccagcttgtgaa |
249 |
Q |
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| T |
10181633 |
gttgacattgttgatatcttcttgatgaggatggagagtaggaggaattacgcgtcttctgctagaggttccatcagcttgtgaa |
10181717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 10343372 - 10343523
Alignment:
| Q |
34 |
atttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacgac |
133 |
Q |
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| T |
10343372 |
atttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccac |
10343471 |
T |
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| Q |
134 |
tattgttccgccattatgttgatgaaat---tgaagacatgttgttgacatc |
182 |
Q |
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| T |
10343472 |
tattgttacaccatgatgttgatgaaatcaaaaaagacatgttgttgacatc |
10343523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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