View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7741_low_46 (Length: 329)
Name: NF7741_low_46
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 50753060 - 50752781
Alignment:
| Q |
1 |
atagagagtgaaatgtgatgagagagactaataaatgcgaagaacgtgaatgtatgagagtgtgagaataagggtactggatagagaatatatagatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50753060 |
atagagagtgaaatgtgatgagagagactaataaatgcgaagaaggtgaatatatgagagtgtgagaataagggtactggatagagaatatatagatgga |
50752961 |
T |
|
| Q |
101 |
ggaagtgcgtgctttatagatggagcaagcgcgtattgaaccaagaccatacacgtggaatcaaggtttgagcggagagattttccannnnnnnnaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
50752960 |
ggaagtgcgtgctttatagatggagcaagcgcgtattgaaccaagaccatacacgtggaatcagggtttgagtggagagattttccatttttttg-acaa |
50752862 |
T |
|
| Q |
201 |
atgggttttaaaaaagagattgatcaatttgttttctatataagtaataaaaatctctaaacttattagtagtggtgtaaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50752861 |
atgggttttaaaaaagagattgatcaatttgttttctatataagtaataaaaatctctaaacttattagtagtggtgtaaa |
50752781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University