View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_48 (Length: 325)
Name: NF7741_low_48
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 26837622 - 26837314
Alignment:
| Q |
1 |
tcaaatcatcaaataaagaaatcacaagtcataagagtttcagaggaaaacatatggagttgataaggctagattattgcatttttgttaccatgttggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26837622 |
tcaaatcatcaaataaagaaatcacaagtcataagagtttcagaggaaaacatatggagttgataaggctagattattgcatttttgttaccatgttggc |
26837523 |
T |
|
| Q |
101 |
aacactttgcctcttgttgctcttgatactcacattttcttggtgggtttttcctatcctaaaacataaaaagcttaagagttgtgggttaggaggagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26837522 |
aacactttgcctcttgttgctcttgatactcacattttcttggtgggtttttcctatcctaaaacataaaaagcttaagagttgtgggttaggaggagga |
26837423 |
T |
|
| Q |
201 |
ccaaccccaacgtttccacttggaaacattgatgagatgaaaataaaagataacgttgcatactcatatctatcacatgatattcatgctaacgttttac |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26837422 |
ccaaccccaaggtttccacttggaaacattgatgagatgaaaataaaagataacgttgcatactcatatctatcacatgatattcatgctaacgttttac |
26837323 |
T |
|
| Q |
301 |
cctactttt |
309 |
Q |
| |
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||||||||| |
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| T |
26837322 |
cctactttt |
26837314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 26837696 - 26837664
Alignment:
| Q |
176 |
taagagttgtgggttaggaggaggaccaacccc |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26837696 |
taagagttgtgggttaggaggaggaccaacccc |
26837664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 45422763 - 45422462
Alignment:
| Q |
1 |
tcaaatcatcaaataaagaaatcacaagtcataagagtttcagaggaaaacatatggagttgataaggctagattattgcatttttgttaccatgttggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
45422763 |
tcaaatcatcaaataaagaaatcacaaatcata-gagtttcagaggaaaacatatggagttgataaggctagatt---gcattattgttaccatgttggc |
45422668 |
T |
|
| Q |
101 |
aacactttgcctcttgttgctcttgatactcacattttcttggtgggtttttcctatcctaaaacataaaaagcttaagagttgtgggttaggaggagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45422667 |
aacactttgcctcttgttgctcttgatactcacattttcttggtgggttttcccaatcctaaaacataaaaagcttaagagttgtgggttagg---agga |
45422571 |
T |
|
| Q |
201 |
ccaaccccaacgtttccacttggaaacattgatgagatgaaaataaaagataacgttgcatactcatatctatcacatgatattcatgctaacgttttac |
300 |
Q |
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|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
45422570 |
ccaaccccaaggtttccacttggaaacattgaagagatgaaaataaaagataacgttgcatactcacatctatcacatgatattcacgctaacgttttac |
45422471 |
T |
|
| Q |
301 |
cctactttt |
309 |
Q |
| |
|
||||||||| |
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|
| T |
45422470 |
cctactttt |
45422462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 243
Target Start/End: Complemental strand, 45413334 - 45413188
Alignment:
| Q |
94 |
tgttggcaacactttgcctcttgttgctcttgatactcacattttcttggtgggtttttcctatcctaaaacataaaaagcttaagagttgtgggttagg |
193 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||| ||||||| || ||| || |||||||| || |||||| |
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| T |
45413334 |
tgttggcaacactatgcctcttattgctcttgatactaacattttcttggtggattttccctatccaaatacacaagaagcttaaaagaaatgggtt--- |
45413238 |
T |
|
| Q |
194 |
aggaggaccaaccccaacgtttccacttggaaacattgatgagatgaaaa |
243 |
Q |
| |
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||||||||||| |||| |||||| ||||||||||||| |||||||||| |
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|
| T |
45413237 |
tggaggaccaactccaagttttccatttggaaacattgaagagatgaaaa |
45413188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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