View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_5 (Length: 646)
Name: NF7741_low_5
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 45129675 - 45130011
Alignment:
| Q |
18 |
cctatggaccacattctgctcagtttctaaggtaaatttggcagtactcgtatatatactgtgtatatgaagggtttgagtctattgttttatagttcta |
117 |
Q |
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| T |
45129675 |
cctatggaccacattctgctcagtttctaaggtaaatttggcagtactcgtatatatactgtgtatatgaagggtttgagtctattgttttatagttcta |
45129774 |
T |
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| Q |
118 |
tcttatgaatcatgttgtgttgagtgcatggctcatagtcatatctgtgaaatccggatagacgttcatagttaaaacgctggttgtgtttatgctgcaa |
217 |
Q |
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| T |
45129775 |
tcttatgaatcatgttgtgttgagtgcatggctcatagtcatatctgtgaaatccggatagacgttcatagttaaaacgctggttgtgtttatgctgcaa |
45129874 |
T |
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| Q |
218 |
acatttatacatggtaaaataagggaaaattatggttgcggattgcaatttaaaactactggagcaggcggagtagtgaaaagtaaaacctagccgctct |
317 |
Q |
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| T |
45129875 |
acatttatacatggtaaaataagggaaaattatggttgcggattgcaatttaaaactactggagcaggcggagtagtgaaaagtaaaacctagccgctct |
45129974 |
T |
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| Q |
318 |
gctcctaggaatgtagtcacattgttcataaatctag |
354 |
Q |
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| T |
45129975 |
gctcctaggaatgtagtcacattgttcataaatctag |
45130011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 409 - 644
Target Start/End: Original strand, 45130066 - 45130301
Alignment:
| Q |
409 |
gcaacaaatcagttttcaattgaaagataatttatcatcattatatttctaaaacaggcatgagcagattgtaatggtgagtggtggaagtggcataact |
508 |
Q |
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| T |
45130066 |
gcaacaaatcagttttcaattgaaagataatttatcatcattatatctctaaaacaggcatgagcagattgcaatggtgagtggtggaagtggcataact |
45130165 |
T |
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| Q |
509 |
ccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttg |
608 |
Q |
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| T |
45130166 |
ccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttg |
45130265 |
T |
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| Q |
609 |
atctagccatgttagatcttatgcttcctgtctctg |
644 |
Q |
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| T |
45130266 |
atctagccatgttagatcttatgcttcctgtttctg |
45130301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 410 - 637
Target Start/End: Original strand, 45113163 - 45113390
Alignment:
| Q |
410 |
caacaaatcagttttcaattgaaagataatttatcatcattatatttctaaaacaggcatgagcagattgtaatggtgagtggtggaagtggcataactc |
509 |
Q |
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||||||| || |||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
45113163 |
caacaaaacaattttcaattgaaagctaatttatcatcattctatctctaaaacaggcatgagcagattgtgatggtgagtggcggaagtggcgtaactc |
45113262 |
T |
|
| Q |
510 |
catttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
609 |
Q |
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| T |
45113263 |
ccttcatatctataatccgagatctcatatttcaaagccaacaacaagaattccaacctccaaaactcctacttgtttgtattttcaaaaactacgctga |
45113362 |
T |
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| Q |
610 |
tctagccatgttagatcttatgcttcct |
637 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
45113363 |
tctaaccatgttagatcttatgcttcct |
45113390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 460 - 609
Target Start/End: Original strand, 45112773 - 45112922
Alignment:
| Q |
460 |
aaacaggcatgagcagattgtaatggtgagtggtggaagtggcataactccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaa |
559 |
Q |
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|||||||||||| |||||||| ||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45112773 |
aaacaggcatgaacagattgtgatggtgagtcgtggaagtcgcataactcccttcatatctataatccgtgatctcatatttcaaagctaacaacaagaa |
45112872 |
T |
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| Q |
560 |
tttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
609 |
Q |
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| T |
45112873 |
tttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
45112922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 178 - 338
Target Start/End: Original strand, 45112921 - 45113082
Alignment:
| Q |
178 |
gacgttcatagttaaaacgctggttgtgtttatgctgcaaacatttataca-tggtaaaataagggaaaattatggttgcggattgcaatttaaaactac |
276 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
45112921 |
gacgttcatagttaaaccgctggttctgtttatgctgcaaacgtttatactgtggtaaaataaggataaattatggttgcggactgcaatttaaaactat |
45113020 |
T |
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| Q |
277 |
tggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtagtcaca |
338 |
Q |
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| T |
45113021 |
tggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtaatcaca |
45113082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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