View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_52 (Length: 307)

Name: NF7741_low_52
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_52
NF7741_low_52
[»] chr4 (16 HSPs)
chr4 (14-307)||(53127843-53128136)
chr4 (81-172)||(33414019-33414110)
chr4 (99-195)||(16457911-16458009)
chr4 (99-172)||(21433923-21433996)
chr4 (231-307)||(53109999-53110075)
chr4 (82-166)||(2324780-2324864)
chr4 (87-163)||(45654049-45654125)
chr4 (117-195)||(993210-993288)
chr4 (105-166)||(2247635-2247696)
chr4 (87-195)||(19382290-19382393)
chr4 (94-163)||(17181264-17181333)
chr4 (94-171)||(25592241-25592318)
chr4 (131-171)||(1338448-1338488)
chr4 (198-228)||(53127812-53127842)
chr4 (82-163)||(24976256-24976337)
chr4 (102-166)||(15134589-15134653)
[»] chr3 (17 HSPs)
chr3 (100-195)||(13540169-13540264)
chr3 (101-195)||(35357369-35357465)
chr3 (94-166)||(36480752-36480824)
chr3 (99-172)||(11532485-11532558)
chr3 (99-155)||(14345201-14345257)
chr3 (99-172)||(31205385-31205458)
chr3 (81-190)||(48543414-48543523)
chr3 (87-163)||(29955063-29955139)
chr3 (87-163)||(30004217-30004293)
chr3 (99-163)||(51541295-51541359)
chr3 (142-197)||(3300714-3300769)
chr3 (99-162)||(32881023-32881086)
chr3 (126-172)||(3901570-3901616)
chr3 (113-155)||(35527121-35527163)
chr3 (105-166)||(46492592-46492652)
chr3 (126-166)||(3901521-3901561)
chr3 (94-166)||(48240394-48240465)
[»] chr2 (12 HSPs)
chr2 (94-172)||(42094248-42094325)
chr2 (94-159)||(1469784-1469849)
chr2 (94-195)||(37810191-37810292)
chr2 (87-195)||(4237288-4237396)
chr2 (101-172)||(42251179-42251250)
chr2 (99-172)||(25666848-25666921)
chr2 (103-163)||(41496113-41496173)
chr2 (99-166)||(3466437-3466504)
chr2 (81-163)||(2683408-2683490)
chr2 (99-172)||(18719747-18719820)
chr2 (99-172)||(33069217-33069290)
chr2 (98-195)||(16209366-16209465)
[»] chr1 (10 HSPs)
chr1 (101-195)||(40668922-40669016)
chr1 (94-172)||(38663667-38663745)
chr1 (100-166)||(2542753-2542819)
chr1 (104-169)||(22336911-22336976)
chr1 (87-171)||(18075183-18075265)
chr1 (110-195)||(34437589-34437676)
chr1 (97-172)||(31970168-31970243)
chr1 (105-163)||(40374093-40374150)
chr1 (134-172)||(49822613-49822651)
chr1 (101-165)||(45563089-45563153)
[»] chr7 (19 HSPs)
chr7 (94-195)||(2276322-2276423)
chr7 (94-172)||(12275783-12275861)
chr7 (81-190)||(46074087-46074196)
chr7 (102-166)||(26862966-26863030)
chr7 (103-171)||(40134440-40134508)
chr7 (106-195)||(29356910-29356999)
chr7 (99-195)||(11201284-11201382)
chr7 (99-165)||(47497750-47497816)
chr7 (131-172)||(2276293-2276334)
chr7 (131-196)||(7526108-7526175)
chr7 (94-172)||(10056668-10056746)
chr7 (100-178)||(18089753-18089831)
chr7 (154-196)||(40134380-40134422)
chr7 (103-172)||(49106960-49107028)
chr7 (99-195)||(3235609-3235705)
chr7 (103-196)||(7017140-7017235)
chr7 (103-196)||(7032498-7032593)
chr7 (121-165)||(24516579-24516623)
chr7 (140-196)||(26862905-26862961)
[»] chr6 (6 HSPs)
chr6 (87-161)||(11650916-11650990)
chr6 (101-165)||(6643367-6643431)
chr6 (102-159)||(3150238-3150295)
chr6 (102-171)||(4483383-4483452)
chr6 (117-165)||(1473638-1473686)
chr6 (106-166)||(31989191-31989251)
[»] chr5 (10 HSPs)
chr5 (94-163)||(3907699-3907768)
chr5 (99-195)||(25545268-25545364)
chr5 (94-172)||(4190075-4190153)
chr5 (126-166)||(35244862-35244902)
chr5 (99-163)||(36059257-36059321)
chr5 (87-163)||(38029565-38029641)
chr5 (101-172)||(41169406-41169477)
chr5 (149-196)||(9999777-9999826)
chr5 (104-172)||(3771221-3771289)
chr5 (131-171)||(3907671-3907711)
[»] chr8 (15 HSPs)
chr8 (87-172)||(42072676-42072761)
chr8 (119-171)||(42209431-42209483)
chr8 (99-195)||(26018510-26018610)
chr8 (94-163)||(34504422-34504491)
chr8 (99-172)||(40696204-40696277)
chr8 (106-171)||(20271023-20271090)
chr8 (106-171)||(21057651-21057718)
chr8 (99-155)||(40694663-40694719)
chr8 (101-159)||(40175946-40176004)
chr8 (99-172)||(35586420-35586492)
chr8 (100-171)||(8402529-8402600)
chr8 (128-171)||(30649965-30650008)
chr8 (104-165)||(13260415-13260476)
chr8 (99-163)||(4994180-4994244)
chr8 (103-195)||(38834993-38835085)
[»] scaffold0003 (1 HSPs)
scaffold0003 (100-172)||(136372-136444)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 53128136 - 53127843
Alignment:
Q  14 gtttggtggttcggggcgtggataagaaatagattgagatagaccgaagtaggcttttccatgtaaagattacaatttatatggaacccaccaaatttat 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53128136 gtttggtggtttggggcgtggataagaaatagattgagatagaccgaagtaggcttttccatgtaaagattacaatttatatggaacccaccaaatttat 53128037  T
Q  114 ataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatttagttcacgccatttgga 213  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| ||||||||||    
T  53128036 ataggacccacttgatatggtgggacccatgtgagttttaaccaatcaaatagtgcgtgttaaaatgagtgttgctagcatttcgttcatgccatttgga 53127937  T
Q  214 tttgatgttgcatccatatcacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53127936 tttgatgttgcatccatatcacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatc 53127843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 33414110 - 33414019
Alignment:
Q  81 gattacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||    
T  33414110 gattaaaattcatatgggacccaccaaatttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtg 33414019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 16458009 - 16457911
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcatt 195  Q
    ||||||||||||||||| |||||||| |||| || |||||||||||||| |||||||||||||||||| ||||| |  |||||| ||||||||||||||    
T  16458009 acccaccaaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgtgttgctagcatt 16457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 21433923 - 21433996
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||||||||  ||||||| |||| ||||||||||||||||| |||||||||||||| ||| |||||    
T  21433923 acccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtg 21433996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 53110075 - 53109999
Alignment:
Q  231 atcacccatcactcatctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatc 307  Q
    |||||||||| |||||||||||||||||||||||| ||||||| |||| | |||||| ||||||||||||||||||||    
T  53110075 atcacccatcgctcatctattaacagtagtcttttctcttattgcaacgtaattatc-tttataggaaacaagatatc 53109999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 2324864 - 2324780
Alignment:
Q  82 attacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| |||| |||||  |  ||||||| ||||||||||||||||||    
T  2324864 attaaaatttacatgggacccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagag 2324780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 45654049 - 45654125
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||||||||  ||| | ||||||||||| |||||||| |||| || |||||||||||||| |||||||||||||||    
T  45654049 aatttatatgagacctatcaaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaa 45654125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 993288 - 993210
Alignment:
Q  117 ggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    |||||||| |||| ||||||||  ||||||| |||||||||||||||||||||||   || ||| ||||||||||||||    
T  993288 ggacccacatgatttggtgggactcatgtgaattttaaccaatcaaagagtgtgttgaaagatgtgtgttgctagcatt 993210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 2247635 - 2247696
Alignment:
Q  105 caaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||  ||||||| |||| ||||||||||||||| | ||||||||||||||||||    
T  2247635 caaatttatatgcgacccacatgatttggtgggatccatgttaattttaaccaatcaaagag 2247696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 19382393 - 19382290
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgtt 186  Q
    |||||||||||  ||| ||||||||||     |||||| |||| ||||||||||||||||| ||||||||||||||| || ||||| |  || | |||||    
T  19382393 aatttatatgggtcccgccaaatttat-----acccacatgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgtt 19382299  T
Q  187 gctagcatt 195  Q
    |||||||||    
T  19382298 gctagcatt 19382290  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 17181264 - 17181333
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| |||||||||||||||||  ||||||| |||| |||||||| | |||||| ||||||| |||||||    
T  17181264 atgggacccaccaaatttatatgagacccacgtgatttggtgggacctatgtgaattttaactaatcaaa 17181333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 25592241 - 25592318
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||| |||||| ||||||||||||||||||| |||| |||||||| | |  ||| ||||||||||| |||||| ||||    
T  25592241 atgggacccacaaaatttatataggacccacatgatttggtgggaccaaaatgaattttaaccaatgaaagagagtgt 25592318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 1338488 - 1338448
Alignment:
Q  131 tggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  1338488 tggtgggatccatgtgatttttaaccaatcaaagagagtgt 1338448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 53127842 - 53127812
Alignment:
Q  198 gttcacgccatttggatttgatgttgcatcc 228  Q
    |||||||||||||||||||||||||||||||    
T  53127842 gttcacgccatttggatttgatgttgcatcc 53127812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 24976337 - 24976256
Alignment:
Q  82 attacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| ||||||||||| |||||||||||| |||| |||||||| |||| || |  |||| |||||| |||| | ||||||||    
T  24976337 attaaaatttatatggtacccaccaaattcatatgggacccacatgatttgtttagatctatgtgaatttttaacaatcaaa 24976256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 15134653 - 15134589
Alignment:
Q  102 caccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||||| |||||||  |||| | || ||| |||||||| ||||||||||| ||||||    
T  15134653 caccaaatttatatgggacccaaatgatttagtcggacccatgtgaattttaaccaataaaagag 15134589  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 13540264 - 13540169
Alignment:
Q  100 cccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||||||||||||||||| | ||| |||| |||||||| |||||| ||||| |||||||||||||| ||||| ||||||| ||||||||| ||||    
T  13540264 cccaccaaatttatataggtctcacatgatttggtgggagccatgttagtttaaaccaatcaaagagagtgtgttaaaatgtgtgttgctaacatt 13540169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 35357369 - 35357465
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaa--agagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||||||||||||| ||||  || |||| |||| ||| |||||||| ||||||||||||||  |||||||||| || |||||||||||||||||||    
T  35357369 ccaccaaatttatatgggacttacatgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgtgttagaatgagtgttgctagcatt 35357465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 36480752 - 36480824
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||| ||||| ||||||||||| |||||||| |||| |||||||| |||||||| ||||| ||||||||||||    
T  36480752 atgggacccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagag 36480824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 11532485 - 11532558
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||| |||||||||| ||| |||| |||| |||||| | |||||||| |||||||||||||||||| |||||    
T  11532485 acccactaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtg 11532558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 14345201 - 14345257
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaac 155  Q
    ||||||||||||||||| |||||||| |||| ||||||||| ||||||| |||||||    
T  14345201 acccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaac 14345257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 31205458 - 31205385
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||| ||||||| |||||||| |||| ||||  || |||||| | |||||||||||||||||| |||||    
T  31205458 acccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtg 31205385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 48543414 - 48543523
Alignment:
Q  81 gattacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatg 180  Q
    ||||| |||||| |||| |||||  |||||||||| ||| |||| |||| || || ||  ||||||| ||||||||||| |||||| ||||  |||||||    
T  48543414 gattaaaatttacatgggacccattaaatttatatgggatccacgtgatttgatgagactcatgtgaattttaaccaattaaagagagtgtattaaaatg 48543513  T
Q  181 agtgttgcta 190  Q
     |||||||||    
T  48543514 tgtgttgcta 48543523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 29955139 - 29955063
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| |||||| | ||| ||||||||| | |||||||| |||| || ||||| |||||||| |||||||||||||||    
T  29955139 aattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaa 29955063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 30004293 - 30004217
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| |||||| | ||| ||||||||| | |||||||| |||| || ||||| |||||||| |||||||||||||||    
T  30004293 aattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaa 30004217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 51541295 - 51541359
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||||||||  |||||||||||||| |||| ||||||||  ||| ||| |||||||||||||||    
T  51541295 acccaccaaaagtatataggacccacatgatttggtgggactcatctgaattttaaccaatcaaa 51541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 3300769 - 3300714
Alignment:
Q  142 atgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcattta 197  Q
    |||||| |||||||| |||||||||  |||| ||||||| ||||||||||||||||    
T  3300769 atgtgaattttaaccgatcaaagagaatgtgttaaaatgtgtgttgctagcattta 3300714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 32881086 - 32881023
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaa 162  Q
    ||||||||||||||||| ||| |||| |||| | |||||| |||||||| | ||||||||||||    
T  32881086 acccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatattaaccaatcaa 32881023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 3901570 - 3901616
Alignment:
Q  126 tgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| |||||||| |||||||| |||||||||||||||||| |||||    
T  3901570 tgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtg 3901616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 35527121 - 35527163
Alignment:
Q  113 tataggacccacttgatatggtgggatccatgtgagttttaac 155  Q
    |||||||||||| |||| ||||||||||||||||| |||||||    
T  35527121 tataggacccacatgatttggtgggatccatgtgaattttaac 35527163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 46492652 - 46492592
Alignment:
Q  105 caaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||||| ||||| | || |||||||||| |||||| |||||| |||||||||||    
T  46492652 caaatttatatagg-cccacataatttggtgggatctatgtgaattttaatcaatcaaagag 46492592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 3901561 - 3901521
Alignment:
Q  126 tgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||| |||||||| |||||||| ||||||||||||||||||    
T  3901561 tgatttggtgggacccatgtgaattttaaccaatcaaagag 3901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 48240394 - 48240465
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||| ||||||||||| | |||||| |||| |||| |||||||||| | ||||||  ||||||||||    
T  48240394 atggaacccatcaaatttatatggaacccacatgatttggt-ggatccatgtaaattttaagtaatcaaagag 48240465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 42094248 - 42094325
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| ||||||||||||||||| |||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  42094248 atgggacccaccaaatttatatgggacccacatgatttggtggga-ccatgtgaattttaaccaatcaaagagtgtgtg 42094325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 1469784 - 1469849
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaat 159  Q
    |||||| ||||||||||||||| |||||||| |||| | ||||||||||||||| |||||||||||    
T  1469784 atggaatccaccaaatttatatgggacccacatgattttgtgggatccatgtgaattttaaccaat 1469849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 37810191 - 37810292
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagca 193  Q
    |||| ||||||||||||||||| |||||||  | || |||||||| |||||||| |||||||||||||||| | ||||| |  || | ||||||||||||    
T  37810191 atgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgatggaaagtgtgttgctagca 37810290  T
Q  194 tt 195  Q
    ||    
T  37810291 tt 37810292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 4237288 - 4237396
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgtt 186  Q
    |||||| |||| | ||||||||||| ||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| |  ||||| |||||||  ||||    
T  4237288 aatttacatgggatccaccaaatttgtatgggacccacatgatttggtggtacccatgtgaattttaactaatcaaaaaaagtgtgttaaaatgtatgtt 4237387  T
Q  187 gctagcatt 195  Q
    |||| ||||    
T  4237388 gctaacatt 4237396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 42251250 - 42251179
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||||||||| ||||| | || |||||||| ||||| || |||||||| ||||||||| |||||    
T  42251250 ccaccaaatttatataggtcccacataatttggtgggacccatgcgaattttaaccgatcaaagagagtgtg 42251179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 25666848 - 25666921
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||||||||| | ||| || |||| ||||||||||||||||  |||||||  ||||||||| |||||    
T  25666848 acccaccaaatttatatggaacctacatgatttggtgggatccatgtggattttaacacatcaaagagagtgtg 25666921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 41496113 - 41496173
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||||||||||||| ||||||||||| | ||| || |||||||| |||||| ||||||||    
T  41496113 accaaatttatatagaacccacttgatttagtgtgacccatgtgaattttaatcaatcaaa 41496173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 3466437 - 3466504
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||| |||| ||||||||  ||| | |||| | |||||||| ||||||||||||||||||    
T  3466437 acccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagag 3466504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 2683408 - 2683490
Alignment:
Q  81 gattacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||| |||| |||||| ||||||| ||||||||  |||||||| |||| |||||| | |||| | | |||||||||||||||    
T  2683408 gattaaaattcatatgggacccaccgaatttatactggacccacatgatttggtggaacccatataaattttaaccaatcaaa 2683490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 18719820 - 18719747
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||| ||||||||||| |||||||| |||| |||||| |  | ||||| ||||||||||||||| || |||||    
T  18719820 acccatcaaatttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtg 18719747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 33069217 - 33069290
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||| ||||||| |||||||| | || | |||||| ||| |||| ||||||||||||||| || |||||    
T  33069217 acccaccaagtttatatgggacccacataatttagtgggacccaagtgatttttaaccaatcaaaaagagtgtg 33069290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 16209465 - 16209366
Alignment:
Q  98 aacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcatt 195  Q
    |||||||||||||||||| ||||| ||   || |||||| |  ||||||| ||||||||||| |||||| ||||| |  ||| || ||||||||||||||    
T  16209465 aacccaccaaatttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgttgctagcatt 16209366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 40669016 - 40668922
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||||||||||||| || ||||| | || | ||| || ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  40669016 ccaccaaatttatatgggtcccacataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaatgtgtgttgctagcatt 40668922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 38663745 - 38663667
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| |||||||||||||||||||||||||  |||| |||||||| | |||||| || ||||||||||||||| |||||    
T  38663745 atgggacccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtg 38663667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 2542753 - 2542819
Alignment:
Q  100 cccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||||||| | |||||| |||| |||||| | |||||||| ||||||||||||||||||    
T  2542753 cccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattttaaccaatcaaagag 2542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 22336976 - 22336911
Alignment:
Q  104 ccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgt 169  Q
    |||||||||||| ||| ||| ||||| || || ||||||||||| |||||||||||||||||||||    
T  22336976 ccaaatttatatgggatccaattgatttgatgagatccatgtgaattttaaccaatcaaagagtgt 22336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 18075265 - 18075183
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||| ||||||| |||||||||||||||| |||||||| |||| |||||  | ||| |||||||||||||||| |||||||||||    
T  18075265 aattcatatggatcccaccaaatttatatgggacccacatgatttggtgtta-cca-gtgagttttaaccaataaaagagtgtgt 18075183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 34437676 - 34437589
Alignment:
Q  110 ttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcatt 195  Q
    |||||| || ||||| |||| |||||||| |||||||| |||||||||||||||||| || || |  |||||| ||||||||||||||    
T  34437676 ttatatgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgttgctagcatt 34437589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 31970168 - 31970243
Alignment:
Q  97 gaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||||||||||| |||||||| |||| |||||||| |||| |||  ||||| |||| ||| || |||||    
T  31970168 gaacccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatttaatcaattaaaaagagtgtg 31970243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 40374093 - 40374150
Alignment:
Q  105 caaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||||||||| |||||||| |||| |||||||  |||||||| |||||||||||||||    
T  40374093 caaatttatatgggacccacatgatttggtggg-gccatgtgaattttaaccaatcaaa 40374150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 49822613 - 49822651
Alignment:
Q  134 tgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  49822613 tgggatccatgtgaattttaaccaatcaaagagagtgtg 49822651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 45563153 - 45563089
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    |||||||||||||||  || | || |||| |||||||| |||||||  |||||||||||||||||    
T  45563153 ccaccaaatttatatgagatcaacatgatttggtgggagccatgtgcattttaaccaatcaaaga 45563089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 2276322 - 2276423
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagca 193  Q
    ||||| |||||||||||||||  |||||||| | || ||||||||| ||||||| ||||||||||| |||||  ||||| ||||||| ||||||||||||    
T  2276322 atggatcccaccaaatttataagggacccacataatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaatgtgtgttgctagca 2276421  T
Q  194 tt 195  Q
    ||    
T  2276422 tt 2276423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 12275783 - 12275861
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| ||||||||||||||||| |||||||| |||| |||||||| |||| ||| |||||||||||| ||||| |||||    
T  12275783 atgggacccaccaaatttatatgggacccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtg 12275861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 46074087 - 46074196
Alignment:
Q  81 gattacaatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatg 180  Q
    ||||| |||||| |||| |||||  |||||||||| ||| |||| |||| || |||||  ||||||| ||||||||||| |||||| ||||| |||||||    
T  46074087 gattaaaatttacatgggacccattaaatttatatgggatccacgtgatttgatgggactcatgtgaattttaaccaattaaagagagtgtgttaaaatg 46074186  T
Q  181 agtgttgcta 190  Q
     |||||||||    
T  46074187 tgtgttgcta 46074196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 26862966 - 26863030
Alignment:
Q  102 caccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||||||| ||||||    
T  26862966 caccatatttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaaagag 26863030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 40134440 - 40134508
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    ||||||||||||| |||||||| | || |||||||| |||||||| ||||||||||||| |||||||||    
T  40134440 accaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaatcagagagtgtgt 40134508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 29356999 - 29356910
Alignment:
Q  106 aaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||| |||| ||| |||| |||  |||||| | |||||||| |||||||||||||||||| |||||  ||||||||||| |||||||||    
T  29356999 aaattcatatgggatccacgtgaattggtggaacccatgtgaattttaaccaatcaaagagagtgtgtaaaaatgagtgtcgctagcatt 29356910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 11201382 - 11201284
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcatt 195  Q
    ||||| |||||||||||  ||||||| |||| |||||||| |||||||| ||||||| ||| |||||| ||||| |  ||| || ||||||||||||||    
T  11201382 acccatcaaatttatatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgttgctagcatt 11201284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 47497750 - 47497816
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    ||||||||||||| ||| |||||||| | || ||||||||  ||||||| |||||||||||||||||    
T  47497750 acccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaaga 47497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 2276334 - 2276293
Alignment:
Q  131 tggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  2276334 tggtgggatccatgtgaattttaaccaatcaaagagagtgtg 2276293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 7526175 - 7526108
Alignment:
Q  131 tggtgggatccatgtgagttttaaccaatcaaa--gagtgtgtgctaaaatgagtgttgctagcattt 196  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||| || |||| ||||| |||||||||    
T  7526175 tggtgggatccatgtgaattttaacaaatcaaagtgagtgtgtgttagaatgtgtgttactagcattt 7526108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 10056668 - 10056746
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||||| ||||||| |||||||| |||| ||| |||| |||| ||  ||||||| ||| |||||| |||||    
T  10056668 atggaacccaccaattttatatgggacccacatgatttggagggacccatatggattttaactaattaaagagagtgtg 10056746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 18089753 - 18089831
Alignment:
Q  100 cccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaa 178  Q
    |||||||||||||||| ||  |||| | || |||| ||| |||||||| |||||||||| ||||||| ||||| |||||    
T  18089753 cccaccaaatttatatgggttccacataatttggttggacccatgtgaattttaaccaaccaaagagagtgtgttaaaa 18089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 40134422 - 40134380
Alignment:
Q  154 accaatcaaagagtgtgtgctaaaatgagtgttgctagcattt 196  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  40134422 accaatcaaagagagtgtgttaaaatgtgtgttgctagcattt 40134380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 49106960 - 49107028
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||||| || ||| | |||| |||||||| | |||||| |||||||||||||||||| |||||    
T  49106960 accaaatttatat-ggtcccgcatgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtg 49107028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 3235609 - 3235705
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||| |||||||| || |||||||| |  |  ||| ||| |||||||| ||||||||||||||| || ||||| |  |||| ||||||||||||||    
T  3235609 acccatcaaatttacatgggacccacatatttgggtcggacccatgtgaattttaaccaatcaaaaagagtgtgttggaatgtgtgttgctagcatt 3235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 7017140 - 7017235
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcattt 196  Q
    ||||||||||||| ||| |||| | || |||| |||   |||||| |||||||||||||||||| ||||  |  |||||| |||||||||||||||    
T  7017140 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcattt 7017235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 7032498 - 7032593
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgct--aaaatgagtgttgctagcattt 196  Q
    ||||||||||||| ||| |||| | || |||| |||   |||||| |||||||||||||||||| ||||  |  |||||| |||||||||||||||    
T  7032498 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcattt 7032593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 24516623 - 24516579
Alignment:
Q  121 ccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    |||| |||| |||||||| |||||||| |||||||||||||||||    
T  24516623 ccacatgatttggtgggacccatgtgaattttaaccaatcaaaga 24516579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 26862961 - 26862905
Alignment:
Q  140 ccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcattt 196  Q
    |||||||| |||||||||||||| ||| ||||| ||||||| |||||| || |||||    
T  26862961 ccatgtgaattttaaccaatcaaggagagtgtgttaaaatgtgtgttgataacattt 26862905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 11650990 - 11650916
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatca 161  Q
    |||||| |||| ||||||||||||||||| |||||||| | || ||||||||||||||||| |||||||||||||    
T  11650990 aatttacatgggacccaccaaatttatatgggacccacataatttggtgggatccatgtgaattttaaccaatca 11650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 6643367 - 6643431
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    ||||||||||||||| |||||||| |||| |||||||| | || ||| |||||||||||||||||    
T  6643367 ccaccaaatttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaaga 6643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 3150295 - 3150238
Alignment:
Q  102 caccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaat 159  Q
    |||||||||||||| | | |||| |||| |||||||| |||||||| |||||||||||    
T  3150295 caccaaatttatatggaatccacatgatttggtgggacccatgtgaattttaaccaat 3150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 4483452 - 4483383
Alignment:
Q  102 caccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||||||||||||| || ||||| |||| |||||||| || | | | |||||||||||||||||| ||||    
T  4483452 caccaaatttatatgggtcccacatgatttggtgggacccgtattaattttaaccaatcaaagagagtgt 4483383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 1473686 - 1473638
Alignment:
Q  117 ggacccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    |||||||| |||| |||||| | |||||||| |||||||||||||||||    
T  1473686 ggacccacatgatttggtggaacccatgtgaattttaaccaatcaaaga 1473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 31989191 - 31989251
Alignment:
Q  106 aaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||| |||||||| |||| || ||||||||||||   ||||||| ||||||||||    
T  31989191 aaatttatattggacccacatgatttgttgggatccatgtatattttaacaaatcaaagag 31989251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 3907699 - 3907768
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| ||||||||||||||||| |||||||| |||| |||||||| |||||||| |||||||||||||||    
T  3907699 atgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 3907768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 25545268 - 25545364
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    |||||| |||||||||| ||||| || |||| ||||||||  || |||| |||||||||||||||||| ||||| ||||||| |||||| |||||||    
T  25545268 acccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgttaaaatgtgtgttgatagcatt 25545364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 4190153 - 4190075
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| |||||||||||| | ||||||||||| | || || |||||||||||||| |||||||||||||||||| |||||    
T  4190153 atgggacccaccaaattcacataggacccacgtaatttgttgggatccatgtgaattttaaccaatcaaagagagtgtg 4190075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 35244902 - 35244862
Alignment:
Q  126 tgatatggtgggatccatgtgagttttaaccaatcaaagag 166  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  35244902 tgatatggtgggatccatgtgaattttaaccaatcaaagag 35244862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 36059257 - 36059321
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||| |||||||||||  ||||||| |||| || |||||||||||| | |||||||||||||||    
T  36059257 acccatcaaatttatatgagacccacatgatttgatgggatccatgtaaattttaaccaatcaaa 36059321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 38029641 - 38029565
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||| ||||| |||||||| |||||||||  || |||| |||| ||||| || |||||||| |||||||||||||||    
T  38029641 aattcatatgaaacccacccaatttatatgagatccacatgatttggtgagacccatgtgaattttaaccaatcaaa 38029565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 41169477 - 41169406
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||||||| |||| | | |||| |||||| |||||||||| ||| ||||||||||| || |||||    
T  41169477 ccaccaaatttatatgggactcgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtg 41169406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 9999777 - 9999826
Alignment:
Q  149 ttttaaccaatcaaaga--gtgtgtgctaaaatgagtgttgctagcattt 196  Q
    |||||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  9999777 ttttaaccaatcaaagacagtgtgtgttaaaatgtgtgttgctagcattt 9999826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 3771221 - 3771289
Alignment:
Q  104 ccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||| || ||| | |||| |||||| | | |||||| ||||||||||||||||||| ||||    
T  3771221 ccaaatttatatgggtcccgcatgatttggtggaaccaatgtgaattttaaccaatcaaagagtatgtg 3771289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 3907711 - 3907671
Alignment:
Q  131 tggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  3907711 tggtgggtcccatgtgaattttaaccaatcaaagagtgtgt 3907671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 42072761 - 42072676
Alignment:
Q  87 aatttatatggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||| |||| |||||||||||||||||  ||||||  |||| |||||||| |||||||| | |||||||||||||||| |||||    
T  42072761 aatttacatgggacccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtg 42072676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 42209431 - 42209483
Alignment:
Q  119 acccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  42209431 acccacatgatatggtgggaaccatgtgaattttaaccaatcaaagagtgtgt 42209483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 26018510 - 26018610
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaa--agagtgtgtgct--aaaatgagtgttgctagcat 194  Q
    ||||||||||||||||| |||||||| | || || ||||| |||||||| ||||||||||||||  |||||||||| |  |||||| |||||| ||||||    
T  26018510 acccaccaaatttatatgggacccacataatttgatgggacccatgtgaattttaaccaatcaaggagagtgtgtgttggaaaatgtgtgttgttagcat 26018609  T
Q  195 t 195  Q
    |    
T  26018610 t 26018610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 34504422 - 34504491
Alignment:
Q  94 atggaacccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    ||||||| |||||||||||||| |||||||| |||| ||||| || ||||| || |||||||||||||||    
T  34504422 atggaactcaccaaatttatatgggacccacatgatttggtgtgacccatgcgaattttaaccaatcaaa 34504491  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 40696277 - 40696204
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    ||||||||||| ||||||| |||||| |||| |||||||| |||||||| ||||||| ||||||| || |||||    
T  40696277 acccaccaaatctatatagaacccacatgatttggtgggacccatgtgaattttaactaatcaaaaagagtgtg 40696204  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 20271090 - 20271023
Alignment:
Q  106 aaatttatataggacccacttgatatggtgggatccatgtga--gttttaaccaatcaaagagtgtgt 171  Q
    |||||||||| |||||||| |||| |||||||||||||||||   |||||||||||||||||| ||||    
T  20271090 aaatttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaagagagtgt 20271023  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 21057718 - 21057651
Alignment:
Q  106 aaatttatataggacccacttgatatggtgggatccatgtga--gttttaaccaatcaaagagtgtgt 171  Q
    |||||||||| |||||||| |||| |||||||||||||||||   |||||||||||||||||| ||||    
T  21057718 aaatttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaagagagtgt 21057651  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 40694663 - 40694719
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaac 155  Q
    ||||||||||| |||||||||||||| |||| |||||||| |||||||| |||||||    
T  40694663 acccaccaaatctatataggacccacatgatttggtgggacccatgtgaattttaac 40694719  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 40175946 - 40176004
Alignment:
Q  101 ccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaat 159  Q
    ||||||||||||||| |||||||| | || |||||||| |||||||| |||||||||||    
T  40175946 ccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaat 40176004  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 35586492 - 35586420
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||||||||||||||||  ||| ||| |||| |||||||| || ||||| |||||||||||||||||| |||||    
T  35586492 acccaccaaatttatatgagactcacatgatttggtggga-ccgtgtgaattttaaccaatcaaagagagtgtg 35586420  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 8402529 - 8402600
Alignment:
Q  100 cccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||| |||||| |||| || ||||| |||| |||||||  ||||| |||||||||||||||||| |||||||    
T  8402529 cccaacaaattaatatgggtcccacatgatttggtggggcccatgagagttttaaccaatcaaatagtgtgt 8402600  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 30650008 - 30649965
Alignment:
Q  128 atatggtgggatccatgtgagttttaaccaatcaaagagtgtgt 171  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  30650008 atatggtgggatccatgtgaattttaacaaatcaaagaatgtgt 30649965  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 13260476 - 13260415
Alignment:
Q  104 ccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaaga 165  Q
    |||||||||||| |||||||| |||  |||||||| |||||||  ||||||||||| |||||    
T  13260476 ccaaatttatatgggacccacatgagttggtgggacccatgtgcattttaaccaataaaaga 13260415  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 4994244 - 4994180
Alignment:
Q  99 acccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaa 163  Q
    |||||| |||||||||| |||||||| |||| ||||||||  |||  || |||||||||||||||    
T  4994244 acccacaaaatttatatgggacccacatgatttggtgggactcataagaattttaaccaatcaaa 4994180  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 38835085 - 38834993
Alignment:
Q  103 accaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtgctaaaatgagtgttgctagcatt 195  Q
    ||||||||||||| |||||| | |||| ||||| || |||||||| |||||  |||||||||||  |||| | ||||| |||| | |||||||    
T  38835085 accaaatttatatgggacccgcatgatttggtgagacccatgtgaattttagtcaatcaaagagaatgtgttgaaatgtgtgtggttagcatt 38834993  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 136372 - 136444
Alignment:
Q  100 cccaccaaatttatataggacccacttgatatggtgggatccatgtgagttttaaccaatcaaagagtgtgtg 172  Q
    |||| ||||||||||| || | ||| |||| || |||||  ||||||||||||||||||||||| || |||||    
T  136372 cccatcaaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtg 136444  T

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