View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_54 (Length: 303)
Name: NF7741_low_54
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 38359463 - 38359745
Alignment:
| Q |
7 |
tactaaaggtttagagtatgagaagaaatatctagtttgaggaaaggactaggaaagaacttcattctgtagttacaaggatggttgcataaatatatat |
106 |
Q |
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| T |
38359463 |
tactaaaggtttagagtatgagaagaaatatctagtttgaggaaagaactaggaaagaacttcattctgtagttacaaggatggttgcataaatatatat |
38359562 |
T |
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| Q |
107 |
agacatttttatatttgtcgtgttaaagtgtacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgttttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359563 |
agacatttttatatttgtcgtgttaaagtgtacatgaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgttttt |
38359662 |
T |
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| Q |
207 |
gttgttatttaatttggtcaaaggtgggaaaaggacttttttaacatataaacattcttgcggtgcaatttaaatggtttttg |
289 |
Q |
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| T |
38359663 |
gttgttatctaatttggtcaaaggtatgaaaaggacttttttaacatataaacattcttgcggtgcaatttaaatggtttttg |
38359745 |
T |
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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 25515444 - 25515535
Alignment:
| Q |
137 |
tacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatttaatttggtcaaa |
228 |
Q |
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| T |
25515444 |
tacatgaaatagtttccatgtaacttcctagcaaaactatgaaatctacactgtatttctttatgtttttgttgttatctaatttggtcaaa |
25515535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 25519930 - 25519840
Alignment:
| Q |
137 |
tacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatttaatttggtcaa |
227 |
Q |
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| T |
25519930 |
tacatgaaatagttttcatgtaacttcctagcaaaactatgaaatctatagtgtatttctttatgttcttgttgttatctaatttggtcaa |
25519840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 7554336 - 7554401
Alignment:
| Q |
7 |
tactaaaggtttagagtatgagaagaaatatctagtttgaggaaaggactaggaaagaacttcatt |
72 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554336 |
tactaaagctttagagaatgagaagaaatatctagtttgaggaaaggactaggaaagaacttcatt |
7554401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 7555271 - 7555308
Alignment:
| Q |
192 |
tttctttatgtttttgttgttatttaatttggtcaaag |
229 |
Q |
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| T |
7555271 |
tttctttatgtttttgttgttacctaatttggtcaaag |
7555308 |
T |
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