View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_55 (Length: 292)
Name: NF7741_low_55
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 4666001 - 4665725
Alignment:
| Q |
1 |
attcaacattcaacatcaaagactgaatcttgtgatcaaaatttacctactcaatttacttctccaagcatagagtcttcattttcaaattccactagca |
100 |
Q |
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| T |
4666001 |
attcaacattcaacatcaaagactgaatcttgtgatcaaaatttacctactcaatttacttctccaagcatagagtcttcattttcaaattccactagca |
4665902 |
T |
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| Q |
101 |
tcaagaaggagagtggagaggaatttgaggtagagatagaaaaggtgccaattacaaggataggaaattttgataaagattgtaacccaaggaagaaact |
200 |
Q |
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| T |
4665901 |
tcaagaaggagagtggagaggaatttgaggtagagatagaaaaggtgccaattacaaggataggaaattttgataaagattgtaacccaaggaagaaact |
4665802 |
T |
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| Q |
201 |
taggctcacaaaagaacaatcagaagttttggaggaaaacttcagagagcattctactcttaatccggtaccttaat |
277 |
Q |
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| T |
4665801 |
taggctcacaaaagaacaatcagaagttttggaggaaaacttcagagagcattctactcttaatccggtaccttaat |
4665725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 47874506 - 47874586
Alignment:
| Q |
190 |
aggaagaaacttaggctcacaaaagaacaatcagaagttttggaggaaaacttcagagagcattctactcttaatccggta |
270 |
Q |
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||||||||||||||||| || ||||||||||| | ||| |||||||| | ||||| ||| ||||||||||| ||||||||| |
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| T |
47874506 |
aggaagaaacttaggcttaccaaagaacaatctgcagtcttggaggacaccttcaaagatcattctactctcaatccggta |
47874586 |
T |
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