View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_56 (Length: 279)
Name: NF7741_low_56
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_56 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 43448033 - 43447766
Alignment:
| Q |
19 |
aattactacaaaaaagttaacttaacataactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtct |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43448033 |
aattactacaaaaaagttgacttaacataactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtct |
43447934 |
T |
|
| Q |
119 |
ctttttcagaagta---------ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag---------nnnnnnnn |
200 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43447933 |
ctttttcagaagtatgctaatttccttgatttgatgcaagcttttaaaagtatcaaaatatact-tagtaatgtatggagaagttttttttatttttttt |
43447835 |
T |
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| Q |
201 |
atgggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
270 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43447834 |
atgggatttttaagcaaagggtttctctcctttta-taagcatatgggtgaaactagctatcatattctt |
43447766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 43592556 - 43592820
Alignment:
| Q |
19 |
aattactacaaaaaa-gttaacttaacataactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtc |
117 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| |
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| T |
43592556 |
aattactacaaaaaaagttgacttaacaaaactacctctctaattgtcctataaataggctaaatttgcaggcactttccatcacattgtttcttccgtc |
43592655 |
T |
|
| Q |
118 |
tctttttcagaagta---------ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnat |
202 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
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| T |
43592656 |
tctttttcagaagtatgctaatttccttgatttgatgcaagcttttaaaagtatcaaaatatactcaa-caatgtatggagaagttttttttttttatat |
43592754 |
T |
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| Q |
203 |
gggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
43592755 |
aggattttgaagcaaagggtttctctccttttactaaacatatggatgaaac--gctatcatattctt |
43592820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 115354 - 115089
Alignment:
| Q |
19 |
aattactacaaaaaagttaacttaacataactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtct |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
115354 |
aattactacaaaaaagttgacttaacaaaactacatctctaattgtcctataaatcggctaaatttgcaggcactttccaccacatcgtttcttccgtct |
115255 |
T |
|
| Q |
119 |
ctttttcagaagta---------ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnatg |
203 |
Q |
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|| ||||||| || ||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||| |
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| T |
115254 |
ctagttcagaattatgctaatatccttgatttaatgcaagcttttaaaagtatcaaaatatactc-agcaatgtatggagaagtttttttttttttaatg |
115156 |
T |
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| Q |
204 |
ggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
270 |
Q |
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| T |
115155 |
ggattttgaagcaaagggtttctctccttttaccaagcattggggtgaaattagctatcatattctt |
115089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 28324039 - 28323774
Alignment:
| Q |
19 |
aattactacaaaaaagttaacttaacataactacctctctaattgtcctataaataggctaaatttgcatgaactttccaccacatcgtttcttccgtct |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
28324039 |
aattactacaaaaaagttgacttaacaaaactacatctctaattgtcctataaatcggctaaatttgcaggcactttccaccacatcgtttcttccgtct |
28323940 |
T |
|
| Q |
119 |
ctttttcagaagta---------ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaag------nnnnnnnnatg |
203 |
Q |
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|| ||||||| || ||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||| |
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| T |
28323939 |
ctagttcagaattatgctaatatccttgatttaatgcaagcttttaaaagtatcaaaatatactc-agcaatgtatggagaagtttttttttttttaatg |
28323841 |
T |
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| Q |
204 |
ggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
270 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| |
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| T |
28323840 |
ggattttgaagcaaagggtttctctccttttaccaagcattggggtgaaattagctatcatattctt |
28323774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 47863163 - 47863097
Alignment:
| Q |
204 |
ggattttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatattctt |
270 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
47863163 |
ggattttgaagcaaagggcttctctccttttactaagcatagggatgaaactagctatcatgttctt |
47863097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 47863246 - 47863189
Alignment:
| Q |
133 |
ccttgatttgatgcaagtttttaaaagtatcaaaatatactcaagtaatgtatggagaa |
191 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| |
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| T |
47863246 |
ccttgatttgatgcaagcttttaaaagtatcgaaatatactc-actaatgtatggagaa |
47863189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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