View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7741_low_58 (Length: 274)
Name: NF7741_low_58
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 7294865 - 7295115
Alignment:
| Q |
7 |
tacattatacttaatttcatatctcaatattttattccgcaatgttgggaagttagcattgaactgttaatgatttttacatcatgagacgtctcactta |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7294865 |
tacattatgcttaatttcatatctcaatattttattccgcaatgttgggaagttagcattgaactgttaatgatttttacatcatgagacgtctcactta |
7294964 |
T |
|
| Q |
107 |
aagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccactatttcctaactgttattacaattttaatttagtttctttcaaaatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7294965 |
aagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccattatttcctaactgttattacaattttaatttagtttctttcaaaatta |
7295064 |
T |
|
| Q |
207 |
attcctcttcaattttgttttcacttggtgtctacctggatgtttaccctg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295065 |
attcctcttcaattttgttttcacttggtgtctacctggatgtttaccctg |
7295115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 7291147 - 7291388
Alignment:
| Q |
17 |
ttaatttcatatctcaatatttta-ttccgcaatgttgggaagttagcattgaactgttaatgatttttacatcat-gagacgtctcacttaaagattat |
114 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||||| ||| || | || || |||||||||| |||| |||| || ||| | || |
|
|
| T |
7291147 |
ttaatttcatatctcagtatttttcttctgcaatgttgggaagttagcagtgacctttgaaagacatttacatcattgagatgtcttgctgaaa-agtac |
7291245 |
T |
|
| Q |
115 |
gtgtgctgttaatgaaaaacaatgagtctt-atttttatcaccactatttcctaactgttattacaattttaatttagtttctttcaaaattaattcctc |
213 |
Q |
| |
|
||| ||| |||| || | ||| || |||| |||||||||| || |||||||| |||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
7291246 |
atgtactgataataaagatcaaagattctttatttttatcatcattatttcctgactgttattatagttttaatt-agtttctttcaaaattaattcctc |
7291344 |
T |
|
| Q |
214 |
ttcaattttgttttcacttggtgtctacctggatgtttaccctg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7291345 |
ttcaattttgttttcacttggtgtctacctagatgtttaccctg |
7291388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University