View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_6 (Length: 641)
Name: NF7741_low_6
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 17 - 622
Target Start/End: Complemental strand, 38533347 - 38532742
Alignment:
| Q |
17 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533347 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
38533248 |
T |
|
| Q |
117 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533247 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacg |
38533148 |
T |
|
| Q |
217 |
tagaaaagctttagaaggtgaacacataggttccttgcggtaggaggagatgagtttgttggcttcacgaagctgggttcgataacgaacggtatgggct |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533147 |
tagaaaagctttagaaggtgaacacataggttccttgcggtaggaggagatgagtttgctggcttcacgaagctgggttcgataacgaacggtatgggct |
38533048 |
T |
|
| Q |
317 |
cgaaggcccggtgcatctttaagaacggtttgaacccatttaggatcttcttcaaggaataatgtgttgccacctgggttaaacgaagcccacatgagag |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533047 |
cgaaggcccggtgcatctttaagaacggtttgaacccatttaggatcttcttcaaggaataatgtgttgccacctgggttaaacgaagcccacatgagag |
38532948 |
T |
|
| Q |
417 |
aatcatggccaagtccgaagacaagaaagttgcatggtcgatcgtaggtttttaagacatcgaaactgatcttgatctctgagaccgattgttgaggaac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532947 |
aatcatggccaagtccgaagacaagaaagttgcatggtcgatcgtaggtttttaagacatcgaaactgatcttgatctctgagaccgattgttgaggaac |
38532848 |
T |
|
| Q |
517 |
aacacgtgatgtggcgtagtgaagaatggctcttagttggatcggtgagggattgttgtcgtcgtttgatcgggctcggatcgaggaggagattggacaa |
616 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38532847 |
aacacgtgatgtggcgtagtgaagaatggctcttagttggatcggtgagggattgttgtcctcgtttgatcgggctcggatcgaggaggagattggacaa |
38532748 |
T |
|
| Q |
617 |
tgtagt |
622 |
Q |
| |
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|||||| |
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| T |
38532747 |
tgtagt |
38532742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 34715115 - 34715272
Alignment:
| Q |
17 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || || ||||| |||||||| || | |||||| | ||||||||||||||||||||||||||||| |
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| T |
34715115 |
acatcatgcaaaaacacgtgcgtcacaccggaaccttttctatttctcgccatcaccgtcattgaaaatatcgccgccattctccccggcgcctccgcga |
34715214 |
T |
|
| Q |
117 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatc |
174 |
Q |
| |
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|||| ||| |||||||||||||||| || | |||||||||||| ||||||| |||||| |
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|
| T |
34715215 |
aataacctctcggcgcatcgatcattatcaaatcccactccgtttcgtaaatctcatc |
34715272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 34715422 - 34715467
Alignment:
| Q |
324 |
ccggtgcatctttaagaacggtttgaacccatttaggatcttcttc |
369 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
34715422 |
ccggtgcgtctttgagaacggtttgaacccatttaggatcttcttc |
34715467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 453
Target Start/End: Complemental strand, 10188944 - 10188847
Alignment:
| Q |
356 |
ttaggatcttcttcaaggaataatgtgttgccacctgggttaaacgaagcccacatgagagaatcatggccaagtccgaagacaagaaagttgcatgg |
453 |
Q |
| |
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|||||||||||||| || ||| |||| |||||| ||| ||||||||| |||||||||| | || || |||| ||| || || |||||||||||||| |
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| T |
10188944 |
ttaggatcttcttcgagatatagtgtgatgccacgtggattaaacgaatcccacatgagtgcgtcgtgaccaattccaaacacgagaaagttgcatgg |
10188847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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