View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_63 (Length: 246)
Name: NF7741_low_63
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 41807022 - 41806808
Alignment:
| Q |
13 |
aatataattttactttacctcattctatgttttgtttttcctccgattttcgctttgagtgggacctctataatttaacaaaaacagtttgaactacaaa |
112 |
Q |
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| T |
41807022 |
aatataattttactttacctcattctatgttttgtttttcctccgattttcgctttgagtgggacctctataatttaacaaaaacagtttgaactacaaa |
41806923 |
T |
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| Q |
113 |
caaccaatttgaatcccaactagaccatgtaattcaaccgaaaactcaaaaaaggagagatgtacggatattagtatctctnnnnnnnngagtacaaata |
212 |
Q |
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| T |
41806922 |
caaccaatttgaatcccaactagaccatgtaattcaaccgaaaactcaaaaaaggaaagatgtacggatattagtatctctaaaaaaaaaagtacgaata |
41806823 |
T |
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| Q |
213 |
ttagtatattactca |
227 |
Q |
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| T |
41806822 |
ttagtatattactca |
41806808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 42032596 - 42032668
Alignment:
| Q |
38 |
tatgttttgtttttcctccgattttcgctttgagtgggacctctataatttaacaaaaacagtttgaactaca |
110 |
Q |
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| T |
42032596 |
tatgttttgtttttccttcgactttcgtgttgagttggacgtttataatttaacaaaaacagtttgaactaca |
42032668 |
T |
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