View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_64 (Length: 241)
Name: NF7741_low_64
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 4651860 - 4651656
Alignment:
| Q |
1 |
cacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgacaacaacttgaagattagagagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
4651860 |
cacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgggggcatgacaacaacttgaagatcagagagca |
4651761 |
T |
|
| Q |
101 |
tagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
4651760 |
tagatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcaccgtgt |
4651661 |
T |
|
| Q |
201 |
taatg |
205 |
Q |
| |
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||||| |
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| T |
4651660 |
taatg |
4651656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 16149253 - 16149049
Alignment:
| Q |
1 |
cacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgacaacaacttgaagattagagagca |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
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| T |
16149253 |
cacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgacaacaactggaagatcagagagca |
16149154 |
T |
|
| Q |
101 |
tagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatcttgt |
200 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16149153 |
taaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatcttgt |
16149054 |
T |
|
| Q |
201 |
taatg |
205 |
Q |
| |
|
||||| |
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|
| T |
16149053 |
taatg |
16149049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 23302808 - 23303012
Alignment:
| Q |
1 |
cacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgacaacaacttgaagattagagagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
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| T |
23302808 |
cacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgacaacaactggaagatcagagagca |
23302907 |
T |
|
| Q |
101 |
tagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatcttgt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23302908 |
taaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatcttgt |
23303007 |
T |
|
| Q |
201 |
taatg |
205 |
Q |
| |
|
||||| |
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|
| T |
23303008 |
taatg |
23303012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 36758532 - 36758426
Alignment:
| Q |
99 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatctt |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36758532 |
cataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
36758433 |
T |
|
| Q |
199 |
gttaatg |
205 |
Q |
| |
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||||||| |
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|
| T |
36758432 |
gttaatg |
36758426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 40109678 - 40109572
Alignment:
| Q |
99 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatctt |
198 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40109678 |
cataaatgaattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
40109579 |
T |
|
| Q |
199 |
gttaatg |
205 |
Q |
| |
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||||||| |
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|
| T |
40109578 |
gttaatg |
40109572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 19083363 - 19083265
Alignment:
| Q |
107 |
gattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatcttgttaatg |
205 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19083363 |
gattcctaaaacgctttacttcatctcgttcatgtttaacccaacttttcaaacaagtaagaatatgtatgataatttagtttagccatcttgttaatg |
19083265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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