View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_65 (Length: 240)
Name: NF7741_low_65
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_65 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 36463247 - 36463419
Alignment:
| Q |
19 |
acacacctgccatgttgctctaaaactcaacctatatcctcacaactcaattcttagctatgttgttctactacattttctttgctattatcttcctctt |
118 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36463247 |
acacacctgctatattgctctaaaactcaacctatatcctcacaactcaattcttagctatgttgttctacttcattttctttgctattatcttcctctt |
36463346 |
T |
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| Q |
119 |
ccttctcttcaagagaataatactaactcacaatcccaaaaaccatatttcacacttcaccacttcttctcac |
191 |
Q |
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| T |
36463347 |
ccttctcttcaagagaataatactaactcacaatcccaaaaaccatatttcatatttcaccacttctactcac |
36463419 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 36661824 - 36661902
Alignment:
| Q |
19 |
acacacctgc-catgttgctctaaaactcaacctatatcctcacaactcaattcttagctatgttgttctactacattt |
96 |
Q |
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| T |
36661824 |
acacacctgcacatattgctctcaaactcagcctatatccttgcatctcaattcctagctatattgttctactacattt |
36661902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 3306473 - 3306522
Alignment:
| Q |
191 |
ctcgaccatctaaaaatcgccaataatcccttaccacctaccaatatcag |
240 |
Q |
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| T |
3306473 |
ctcgaccatctaaaaatcgccaataaccccttaccacctaccaatatcag |
3306522 |
T |
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