View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_7 (Length: 586)
Name: NF7741_low_7
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 201 - 575
Target Start/End: Complemental strand, 41392219 - 41391856
Alignment:
| Q |
201 |
attatagcatataagttaatattacactttcaaggcataagggaacgccactaggcaagacaacattaattgtataaatcacatgttgtcccctttgcta |
300 |
Q |
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| T |
41392219 |
attatagcatattagttaatattacactttcaaggcataggggaacacca---------------ttaactgtataaatcacactttgtcccctttgcta |
41392135 |
T |
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| Q |
301 |
aatagcatgtgccacataggatttaatgtatgcagccatatcttacttttggttggatgtaagcattctcatttaactcatgcacgcatctctccaacct |
400 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41392134 |
aatagcctgtgctacatagggtttaatgtatgcagccatatcttacttttggttggatgtaagcattctcatttaactcatgcaaccatatctccaacct |
41392035 |
T |
|
| Q |
401 |
atcatttgttgttttccaatgttt----ggatagttgagtagaattcattcagccacttttccattgttggataacatgcatgaaaaggaattcttccaa |
496 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41392034 |
atcatttgttgttttccaatgtttaattggatagttgagtagaattaattcagccacttttccattgttggataacatgcatgaaaaggaattcttttaa |
41391935 |
T |
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| Q |
497 |
gatagagcaatccttacacctaaaatagtttgtattaatcctttcactatgtttatttatctattctgtttcatttcag |
575 |
Q |
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| T |
41391934 |
gatagagcaatccttacacctaaaacagtttgtattaatcctttcactctgtttatttatctgttctatttcatttcag |
41391856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 41392985 - 41392834
Alignment:
| Q |
58 |
ttaatgtttttctcacgttttgtcgcctggctttggatgattgaattcagttacagttggctgaatagctacaattaattattagtagtctcacttccct |
157 |
Q |
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| T |
41392985 |
ttaatgtttttctcacgttttgtcccctcgctttggatgattaagttcagttacagttggctgaatagcttcaattaattattagtagtctcacttccct |
41392886 |
T |
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| Q |
158 |
actgtaaattgattcgcgc-aaaatactatctgcatgcacatatattatagc |
208 |
Q |
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| T |
41392885 |
actataaattgattcgcgcaaaaatactatctgcatgcacatatattatagc |
41392834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 43027191 - 43027129
Alignment:
| Q |
459 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
521 |
Q |
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| T |
43027191 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatacttacacctaaaa |
43027129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 925154 - 925216
Alignment:
| Q |
459 |
cattgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
521 |
Q |
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| T |
925154 |
cattgttggataacatgcatgaaaaggatttcttccaagatagagcaatacttacacctaaaa |
925216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 461 - 521
Target Start/End: Complemental strand, 44703696 - 44703636
Alignment:
| Q |
461 |
ttgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
521 |
Q |
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| T |
44703696 |
ttgttggataacatgcatgaaaatgaattcttccaagatagagcaatacttacacctaaaa |
44703636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 925847 - 925884
Alignment:
| Q |
538 |
tttcactatgtttatttatctattctgtttcatttcag |
575 |
Q |
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| T |
925847 |
tttcactttgtttatttatctgttctgtttcatttcag |
925884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 5453645 - 5453705
Alignment:
| Q |
461 |
ttgttggataacatgcatgaaaaggaattcttccaagatagagcaatccttacacctaaaa |
521 |
Q |
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| T |
5453645 |
ttgttggataacatgcatgaaaacgaattcttccaagatagagcaatacttacacctaaaa |
5453705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 5452792 - 5452874
Alignment:
| Q |
279 |
tcacatgttgtcccctttgctaaatagcatgtgccacataggatttaatgtatgcagccatatcttacttttggttggatgta |
361 |
Q |
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| T |
5452792 |
tcacattttgtccccttagctgaattgcctctgccacattgggtttaatgtatgcagccatatcttactctttgttggatgta |
5452874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 5454335 - 5454372
Alignment:
| Q |
538 |
tttcactatgtttatttatctattctgtttcatttcag |
575 |
Q |
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| T |
5454335 |
tttcactctgtttatttatctgttctgtttcatttcag |
5454372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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