View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_75 (Length: 218)
Name: NF7741_low_75
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 29678361 - 29678545
Alignment:
| Q |
18 |
aatattttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaactcacaacctcaaatcaaactca |
117 |
Q |
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| T |
29678361 |
aatattttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaacttacaacctcaaatcaaactca |
29678460 |
T |
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| Q |
118 |
ttgatcttcctcaagttgaatcaccaccaaaagaactattgatatcaccaccatgctacatcaaagcactcatgcacaccctcac |
202 |
Q |
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| T |
29678461 |
ttgatcttcctcaagttgaatcaccaccaaaagaactattgatatcaccaccatgctacatcaaagcacttatgcacaccctcac |
29678545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 29700829 - 29700954
Alignment:
| Q |
26 |
catcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaactcacaacctcaaatcaaactcattgatctt |
125 |
Q |
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| T |
29700829 |
catcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattcaactgattgatctt |
29700928 |
T |
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| Q |
126 |
cctcaagttgaatcaccaccaaaaga |
151 |
Q |
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| T |
29700929 |
cctgaagtagaaccacctccacaaga |
29700954 |
T |
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