View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_77 (Length: 211)
Name: NF7741_low_77
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 38092467 - 38092285
Alignment:
| Q |
14 |
ataatactggttttcttagtgtttggactttggtgggttccaacannnnnnn--aggtaaatctataagcatatcagttatttaactatattactaagat |
111 |
Q |
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| T |
38092467 |
ataatgctggttttcttagtgtttggactttggtgggttccaacatttttttttaggtaaatctataagcatatcagttatttaactatattactaagat |
38092368 |
T |
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| Q |
112 |
ctacttagnnnnnnnnct-attaccaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaa |
193 |
Q |
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|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38092367 |
ctacttagaaaaaaaaattattatcaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaa |
38092285 |
T |
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