View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_8 (Length: 559)
Name: NF7741_low_8
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Original strand, 42995822 - 42996309
Alignment:
| Q |
20 |
aagaagacttacctaatcattttagcaggcaaacagaaggtatatacccccacattattgcattgcgaaactaaaataaaatagagcaccggtaagatca |
119 |
Q |
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| T |
42995822 |
aagaagacttacctaatcattttagcaggcaaacagaaggtata--cccgcacattattgcattgcgaaactaaaataaaatagagcaccggtaagatca |
42995919 |
T |
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| Q |
120 |
tgaaattgctacataggtgaccaccgtccgtcggagaaccgataaccaccacatcgacaatgttaccattgtcagaatcgtctcgagtcatcattttaaa |
219 |
Q |
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| T |
42995920 |
tgaaattgctacataggtgaccaccgtccgtcggagaaccgataaccaccacatcgacaatgttaccattgtcagaatcgtctcgagtcatcatttt--- |
42996016 |
T |
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| Q |
220 |
gttttatcctactgatgaatgctcaatatttgtcgttagagatggaagaaggtattatactttcaggtatgtagagtatagacacatacgtacaagaagt |
319 |
Q |
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| T |
42996017 |
-----atcctactgatgaatgctcaatatttgtcgttagagatggaagaaggtattatactttcaggtatgtagagtatagacacacacgtacaagaagt |
42996111 |
T |
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| Q |
320 |
tgctactatactatagtggaaacatataattgaaaatatgggaagcatgcatgcattagagagtagtcaagcatgaaaacggtagtagcattaatttagg |
419 |
Q |
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|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42996112 |
tgctactatactatagtggaaacata-attggaaaatatgggaagcatgcatgcattagagagtagtcaagcatgaaaacggtagtagcattaatttagg |
42996210 |
T |
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| Q |
420 |
aatagtnnnnnnngtgcatgacttagtcaatacatacatgaaacaatataataagaataaataatcttctattgaatgacgcacgcaaatattaaatat |
518 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42996211 |
aatagtaaaaaaagtgcatgacttagtcaatacatacatgaaacaatataataagaataaataatcttctattgaatgacgcacgcaaatattaaatat |
42996309 |
T |
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