View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7742_high_4 (Length: 547)
Name: NF7742_high_4
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 51913066 - 51912576
Alignment:
| Q |
9 |
gagaagaacgtaacttgagtcagttttggtttccaatattgagcacacccatgtgtgaattatttctttcttttccttctgtttcgtacacgcgtgcagt |
108 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51913066 |
gagatgaacgtaacttgagttagttttggtttccaatattgagcacacccatgtgtgaattatttctttcttttccttctgtttcgtacacgcgtgcagt |
51912967 |
T |
|
| Q |
109 |
aaacca-ggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattact |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912966 |
aaaccaaggggaaaaagcaaaagaagaaactactgtatagtagcaacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattact |
51912867 |
T |
|
| Q |
208 |
aattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912866 |
aattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgc |
51912767 |
T |
|
| Q |
308 |
ctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnnnggcagctcacactcactcacacccctcacttattttcctgccgtgcaccca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912766 |
ctgtgctctgtgctctgtgtgtgtcagttatgcagaaa---aaaaaaaaggcagctcacactcactcacacccctcacttattttcctgccgtgcaccca |
51912670 |
T |
|
| Q |
408 |
atttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaagacac |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912669 |
atttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaagacac |
51912576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University