View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_high_5 (Length: 495)
Name: NF7742_high_5
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 22792663 - 22792324
Alignment:
| Q |
12 |
tgttgtcgtcagatgaagatggattgaagacttcaagtgagcctcgatggtctcttgtaaatggttccatcactttcactttctgtttcattgttgttca |
111 |
Q |
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| T |
22792663 |
tgttgtcgtcagatgaagatggattgaagacttcaagtgagcctcgatggtctcttgtaaatggttccatcactttcactttctgtttcattgttgttca |
22792564 |
T |
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| Q |
112 |
tgtacatataaattattaacaactatagtaattcatgatgcaaattgtactcactaatagtaataaataagtaactgaaattttgcatttctaattgttt |
211 |
Q |
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| T |
22792563 |
tgtacatataaataattaacaactatagtaattcatgatgcaaattgtactcactaatagtgataaataagtaactgaaattttgcatttctaattgttt |
22792464 |
T |
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| Q |
212 |
aactatatatcatcaatcaatatataaatatgtacgtgcatatattttttgggggaatggggaacaaatgaattaactaagagtgggatagtgttagttg |
311 |
Q |
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| T |
22792463 |
aactatatatcatcaatcaatatataaatatgtacgtgcatatattttttgggggaatggggaacaaatgaattaactaagagtgggatagtgttagttg |
22792364 |
T |
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| Q |
312 |
ttggaatggcatatattc-ggggtgtaatatatgatatac |
350 |
Q |
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| T |
22792363 |
ttggaatggcatatattcgggggtgtgatatatgatatac |
22792324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 346 - 478
Target Start/End: Complemental strand, 22792305 - 22792173
Alignment:
| Q |
346 |
tatacagtgaatgatgagttgtttgggtggggcttcaatcgggattctcctaatccggattcctttgaatcactgactacacgcattcacgtagttatgt |
445 |
Q |
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| T |
22792305 |
tatacagtgaatgatgagttgtttgggtggggcttcaatcgggattctcctaatccgaattcctttgaatcactgactacacgcattcacgtagttatgt |
22792206 |
T |
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| Q |
446 |
gatctgcgagcgttcgatcgagatccaatagtt |
478 |
Q |
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| T |
22792205 |
gatttgcgagcgttcgatcgagatccaatagtt |
22792173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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