View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_high_9 (Length: 249)
Name: NF7742_high_9
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_high_9 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44612291 - 44612042
Alignment:
| Q |
1 |
aaaatatgatagagaaattgaagtgtgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44612291 |
aaaatatgatagagaaattgaagtatgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
44612192 |
T |
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| Q |
101 |
aatccactttgactaagaatatcacttactat---------------ccaaagtttgattcggtttttcacattatctccgataagctggacattaaaac |
185 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44612191 |
aatccactttgactaagaatatcacttactatcccgtaccatcctcgccaaagtttgattcggtttttcacattatctccgataagctggacattaaaac |
44612092 |
T |
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| Q |
186 |
gtgctgacaacacatcagctgcagcgttgtatgccactgctttccatgct |
235 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44612091 |
gtgctgacaacacatcagctgcagcgttctatgccactgctttccatgct |
44612042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 9794 - 10043
Alignment:
| Q |
1 |
aaaatatgatagagaaattgaagtgtgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9794 |
aaaatatgatagagaaattgaagtatgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcattccaatca |
9893 |
T |
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| Q |
101 |
aatccactttgactaagaatatcacttactat---------------ccaaagtttgattcggtttttcacattatctccgataagctggacattaaaac |
185 |
Q |
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| T |
9894 |
aatccactttgactaagaatatcacttactatcccgtaccatcctcaccaaagtttgattcgatttttcacattatctccgataagctggacattaaaac |
9993 |
T |
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| Q |
186 |
gtgctgacaacacatcagctgcagcgttgtatgccactgctttccatgct |
235 |
Q |
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| T |
9994 |
gtgctgacaacacatcagctgcagcgttgtatgccactgctttccatgct |
10043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22247897 - 22247648
Alignment:
| Q |
1 |
aaaatatgatagagaaattgaagtgtgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
100 |
Q |
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|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
22247897 |
aaaatatgatagagaatttgaagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatcccgatca |
22247798 |
T |
|
| Q |
101 |
aatccactttgactaagaatatcacttactat---------------ccaaagtttgattcggtttttcacattatctccgataagctggacattaaaac |
185 |
Q |
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|||||||||||||| || |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
22247797 |
aatccactttgactgaggatatcacttactatctcgtaccatccttgccaaagtttgatgtggtttatcacattatctccgataagctggacattaaaac |
22247698 |
T |
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| Q |
186 |
gtgctgacaacacatcagctgcagcgttgtatgccactgctttccatgct |
235 |
Q |
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|||| |||||| |||||| |||||| |||||||||||||||||||||||| |
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| T |
22247697 |
gtgcagacaacgcatcagttgcagcattgtatgccactgctttccatgct |
22247648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 41316348 - 41316143
Alignment:
| Q |
29 |
aataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatcaaatccactttgactaagaatatcactta |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| | |||||||| |||||||| ||||||| ||||||||| | | |
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| T |
41316348 |
aataccttgacatattcattccatgcattttcatcttcgacggtaatcatacagtttgtgccatcccaaccaaatccattttgactgagaatatcattaa |
41316249 |
T |
|
| Q |
129 |
ctat---------------ccaaagtttgattcggtttttcacattatctccgataagctggacattaaaacgtgctgacaacacatcagctgcagcgtt |
213 |
Q |
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|||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| || |
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| T |
41316248 |
ctatcccataccatcttcgccaaagtttgacgcggtttttcacattctctccgataagctgaacattaaaacgtgtagacaacacatcagctgcagcttt |
41316149 |
T |
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| Q |
214 |
gtatgc |
219 |
Q |
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|||||| |
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| T |
41316148 |
gtatgc |
41316143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1991740 - 1991614
Alignment:
| Q |
1 |
aaaatatgatagagaaattgaagtgtgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1991740 |
aaaatatgatagagaaattgaagtatgaaatacctt-acatattcattccatttattttcatcttcgacattaatcatgcattttggggcatcccaatca |
1991642 |
T |
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| Q |
101 |
aatccactttgactaagaatatcactta |
128 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
1991641 |
aatccactttgaccgagaatatcactta |
1991614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 3297788 - 3297658
Alignment:
| Q |
1 |
aaaatatgatagagaaattgaagtgtgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatcccaatca |
100 |
Q |
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|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3297788 |
aaaatatgatagagaatttgaagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttgggtcatcccaatca |
3297689 |
T |
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| Q |
101 |
aatccactttgactaagaatatcacttacta |
131 |
Q |
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||||||||||| || || |||||||| |||| |
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| T |
3297688 |
aatccactttgcctgaggatatcactaacta |
3297658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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