View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_1 (Length: 751)
Name: NF7742_low_1
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Original strand, 6137888 - 6138364
Alignment:
| Q |
9 |
ctatattattctccaacttggaatcatctactcacgtagctagggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaat |
108 |
Q |
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| T |
6137888 |
ctatattattctccaacttggaatcatctactcacgtag----ggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaat |
6137983 |
T |
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| Q |
109 |
tataataatataagatatggttactaattgattgtatataaataaaatcagca--gtgtgtgtgataagaaaacaaataataaagagtgagtggagcatt |
206 |
Q |
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| T |
6137984 |
tataataatataagatatggttactaattgattgtatataaataaaatcagcaatgtgtgtgtgataagaaaacaaataataaagagtgagtggagcatt |
6138083 |
T |
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| Q |
207 |
ataggaaaataaagggtaaggtgtaacatagcttgtgtttgatgatttaagtcacaaagtttagaaatcatttcacgtggattgtaagtgtacaaagcta |
306 |
Q |
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| T |
6138084 |
ataggaaaataaagggtaaggtgtaacatagcttgtgtttgatgatttaagtcacaaagtttagaaatcatttcacgtggattgtaagtgtacaaagcta |
6138183 |
T |
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| Q |
307 |
aggtacctttgatcatgtgacatacagatagagttagaagcagaaacaactaatcacctaataaattaatatgtgaattattgttagagaatgagaagca |
406 |
Q |
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| T |
6138184 |
aggtacctttgatcatgtgacatacagatagagttagaagcagaaacaactaatcacctaataaattaatatgtgaattattgttagagaatgagaagca |
6138283 |
T |
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| Q |
407 |
gaaggaaatagatcaggtcggttcttggaaacacccttgccttgtcatcacaactgtaatgcctgcaatttttgttatcct |
487 |
Q |
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| T |
6138284 |
gaaggaaatagatcaggtcggttcttggaaacacccttgccttgtcatcacaactgtaatgcctgcaatttttgttatcct |
6138364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 551 - 736
Target Start/End: Original strand, 6138428 - 6138613
Alignment:
| Q |
551 |
gatgcaagttataaggttcactatgaagtagatccgtacttgaaaattgtctaaaagtttatcgacttctttattgtaatgtttgagacaatgacttgct |
650 |
Q |
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| T |
6138428 |
gatgcaagttataaggttcactatgaagtagatccatacttgaaaattgtctaaaagtttatcgacttccttattgtaatgtttgagacaatgacttgct |
6138527 |
T |
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| Q |
651 |
cgatgttaatttgccaaaaacagaaaaagcaaacatgtgtgactccgctctannnnnnngtttgttatgtaagtaaagtaactttt |
736 |
Q |
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| T |
6138528 |
cgatgttaatttgccaaaaacagaaaaagcaaacatgtgtgactccgctctatttttttgtttgttatgtaagtaaagtaactttt |
6138613 |
T |
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