View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_12 (Length: 201)
Name: NF7742_low_12
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 47815797 - 47815616
Alignment:
| Q |
1 |
ataccctgaaccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggtttcagggacatcaccattt |
100 |
Q |
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| T |
47815797 |
ataccctgaaccaaaccaacaacaatttgtagactagaaatagaaaagaaaaaaaacaccaacctgctttccctctatggtttcagggacatcaccattt |
47815698 |
T |
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| Q |
101 |
gcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttggtac |
182 |
Q |
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| T |
47815697 |
gcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttggtac |
47815616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 47380325 - 47380156
Alignment:
| Q |
9 |
aaccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggtttcagggacatcaccatttgcaatccg |
108 |
Q |
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| T |
47380325 |
aaccaaaccaacaacaatttgtaaactagaaatagaaa--gaaagaaacaccaacctgctttccctctatggtttcagggacatcaccatttgcaatccg |
47380228 |
T |
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| Q |
109 |
ttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttggt |
180 |
Q |
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| T |
47380227 |
ttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttggt |
47380156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 45112397 - 45112285
Alignment:
| Q |
68 |
tttccctctatggtttcagggacatcaccatttgcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaag |
167 |
Q |
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| T |
45112397 |
tttccctcgattgtttcaggtacatcaccatttgcaatccgctgagcaagaccttcagcaattgctgtcttcccaacaccaggttctccaataagacaag |
45112298 |
T |
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| Q |
168 |
gattatttttggt |
180 |
Q |
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| T |
45112297 |
gattatttttggt |
45112285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 17717536 - 17717356
Alignment:
| Q |
1 |
ataccctgaaccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggtttcagggacatcaccattt |
100 |
Q |
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| T |
17717536 |
ataccctgaaccaaaccaacaacaaattgtagactagaaataaaaaagaaaaaaaacaccaacctgctttccctctatggtttcagggacatcaccattt |
17717437 |
T |
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| Q |
101 |
gcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttggta |
181 |
Q |
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| T |
17717436 |
gcaatccgttgggcgagaccttcagcaatagctgtctttccaacaccaggttccccaataagacaaggattatttttggta |
17717356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 40243316 - 40243191
Alignment:
| Q |
57 |
caccaacctgctttccctctatggtttcagggacatcaccatttgcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttcccc |
156 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
40243316 |
caccaaccttctttccctctatggtttcggggacatcaccatttgcaatccgttgagcaagaccttcagcaattgctgtctttccgacaccaggttcccc |
40243217 |
T |
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| Q |
157 |
aataagacaaggattatttttggtac |
182 |
Q |
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| T |
40243216 |
aataagacaaggattatttttggtac |
40243191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 34056058 - 34056230
Alignment:
| Q |
1 |
ataccctgaaccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggtttcagggacatcaccattt |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||||| |||||||| ||| |
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| T |
34056058 |
ataccctgaatcaaaccaacaacaatttgtagactagaaatagaaagaaaaaaaaacaccaaccttctttc--tcta-ggtttcgtggacatca---ttt |
34056151 |
T |
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| Q |
101 |
gcaatccgttgggcgagaccttcagcaatagctgtctttccgacaccaggttccccaataagacaaggattatttttgg |
179 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34056152 |
gcaatccgttgggggagaccttcaacaatagctgtctttccgacaccaggttccccaataagacaaggattatttttgg |
34056230 |
T |
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