View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_3 (Length: 627)
Name: NF7742_low_3
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 33723535 - 33723105
Alignment:
| Q |
17 |
acatcaattaaaacttttgtacactgaccgtgtatataaattaaactctttcaaaatattatgtgatttgacagactaaaagatgttcaatggatgtcag |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33723535 |
acatcaattaaaacttttgtacactgacgatgtatataaattaaactctttcaaaatattatgtgatttgacagactaaaagatgttcaatggatgtcag |
33723436 |
T |
|
| Q |
117 |
tcagtataaaactattttacactaacaatgcatcttcagtcttctctacaactacttttccttttgctctaaccatacccgcaaattaaacttaaaccgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33723435 |
tcagtataaaactattttacactaacaatgcatcttcagtcttctctacaactacttttcctttcgctctaaccatacccgcaaattaaacttaaaccgc |
33723336 |
T |
|
| Q |
217 |
aagcaattaaaatccccattatccctttacactagcaacttatatctccttcccataacactacatcatcaatttgatttttaaccttaaattcctctac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33723335 |
aagcaattaaaatccccattatccctttacactagcaacttatatctccttcccataacactacatcatcaatttgatttttaacctcaaattcctctac |
33723236 |
T |
|
| Q |
317 |
cctaaacnnnnnnnnnnnnngcccataccctaaaaaacttcagttacctgtccggcggagtttttagtaaaagtgggctcctcagttaaaatctgatctt |
416 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33723235 |
cctaaacaaaaacaaaaaaagcccataccct-aaaaacttaagttacctgtccggcggagtttttagtaaaagtgggctcctcagttaaaatctgatctt |
33723137 |
T |
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| Q |
417 |
ccaacaccttcccacaagaagtacaaaccctg |
448 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
33723136 |
ccaacactttcccacaagaagtacaaaccctg |
33723105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 473 - 610
Target Start/End: Complemental strand, 33723068 - 33722931
Alignment:
| Q |
473 |
tgaatacagataagaaattttcagtttcacaacacattcgaaattgaacaagcataacaagtaataacagtaacagaatgtagaaattgaaataaaaagg |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33723068 |
tgaatacagataagaaattttcagtttcacaacacattcgaaattgaacaagcataacaggtaataacagtaacagaatgtagaaattgaaataaaaagg |
33722969 |
T |
|
| Q |
573 |
tgaattgttggttgaattagtgtgaaagagtgatagtt |
610 |
Q |
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| T |
33722968 |
tgaattgttggttgaattagtgtgaaagagtgatagtt |
33722931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 29448099 - 29448059
Alignment:
| Q |
25 |
taaaacttttgtacactgaccgtgtatataaattaaactct |
65 |
Q |
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| T |
29448099 |
taaaacttttatacactgaccctgtatataaattaaactct |
29448059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 1018611 - 1018649
Alignment:
| Q |
25 |
taaaacttttgtacactgaccgtgtatataaattaaact |
63 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
1018611 |
taaaacatttgtacactgacagtgtatataaattaaact |
1018649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 9477613 - 9477572
Alignment:
| Q |
25 |
taaaacttttgtacactgaccgtgtatataaattaaactctt |
66 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
9477613 |
taaaacttttgtacattgacaatgtatataaattaaactctt |
9477572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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