View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_5 (Length: 535)
Name: NF7742_low_5
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 12 - 519
Target Start/End: Original strand, 47288544 - 47289049
Alignment:
| Q |
12 |
tagcagagaatcagtggataacagtatcagagatgtatgctttagcctggaagattgggggagaagcttggaattattccagaaacattgaatgtgtgtg |
111 |
Q |
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| T |
47288544 |
tagcagagaatcagtggataacagtatcagagatgtatgctttagcctggaagattgggggagaagcttggaattattccagaaacattgaatgtgtgtg |
47288643 |
T |
|
| Q |
112 |
ttcatcggtcggggtttacaagaaagtatgaatcatttatttttgggatgtgatgtgtttgggatcatctgcataattgttaagcaatgggtaagtattt |
211 |
Q |
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| T |
47288644 |
ttcattggtcggggtttacaagaaagtatgaatcatttatttttgggatgtgatgtgtttgggatcatctgcataattg--aagcaatgggtaagtattc |
47288741 |
T |
|
| Q |
212 |
aatcagtaaatccttcccatttggcggcaaatttgaagtactttagcgccttaggcgggttcttaaaaataaattgttattacctccatataatttagct |
311 |
Q |
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| T |
47288742 |
aatcagtaattccttcccatttggcggcaaatttgaagtactttagcgccttaggcgggttcttaaaaataatttgttattacctacatataatttagct |
47288841 |
T |
|
| Q |
312 |
agcttctctaagtgccatctcgaaagaagaaaattaacattgttttcagcaaaaggcggagtcatcgaacaattttttgagatagttaaatggttatcat |
411 |
Q |
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| T |
47288842 |
agcttctctaagtgtcatctcgaaagaagaaaattaacattgttttcagcaaaaggcggagtcatcgaacaattttttgagatagttaaatggttatcat |
47288941 |
T |
|
| Q |
412 |
tttgttgttggtgatttaaagagnnnnnnnngatcatagtttatctcttgatcnnnnnnnaaacgtatcttttgatcttaatcatggactaatcttatca |
511 |
Q |
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| T |
47288942 |
tttgttgttggtgatttaaagagaaaaaaaagatcatagtttatctcttgatctttttttaaacgtatcttttgatcttaatcatggactaatcttatca |
47289041 |
T |
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| Q |
512 |
tgtttttg |
519 |
Q |
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| T |
47289042 |
tatttttg |
47289049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 11193496 - 11193409
Alignment:
| Q |
146 |
atttatttttgggatgtgatgtgtttgggatcatctgcataattgttaagcaatgggtaagtatttaatcagtaaatccttcccattt |
233 |
Q |
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|||||||||||| |||||| |||||| ||| ||| || ||| | ||||||||||| | |||| |||||||||||||||||||||| |
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| T |
11193496 |
atttatttttggaatgtgacgtgttttggagcatttgaatattggttaagcaatgacttgatattcaatcagtaaatccttcccattt |
11193409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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