View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_7 (Length: 399)
Name: NF7742_low_7
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 51310276 - 51310015
Alignment:
| Q |
18 |
aagagatggagaaggaagagaggttggtggcttgtggaacatgtaagaatgttattcatgaagagtgtttgacgagatggaagagaagtagtggacgaag |
117 |
Q |
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| T |
51310276 |
aagagatggagaaggaagagaggttggtggcttgtggaacatgtaagaatgttattcatgaagagtgtttgacgagatggaagagaagtagtggacgaag |
51310177 |
T |
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| Q |
118 |
atcggctagttgtgtgatttgtagggcaaggtggagggatagaaatgaacaagataagtatgttaatctatctgcttatattagtgaggaagatatgttg |
217 |
Q |
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| T |
51310176 |
atcggctagttgtgtgatttgtagggcaaggtggagggatagaaatgaacaagataagtatgttaatctatctgcttatattagtgaggaagatatgttg |
51310077 |
T |
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| Q |
218 |
gcacaaccttatggggacatttgcactagttagcatagattacaaattcatctcttatttag |
279 |
Q |
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| T |
51310076 |
gcacaaccttatggggacatttgcactagttagcatagattgcaaattcatctcttatttag |
51310015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 51309936 - 51309821
Alignment:
| Q |
274 |
atttagcagacactgcattattggattgttcataagtttatgttaatttgtatatagcaagtatgtttatgtaaacttgttttcaatttctagctctggt |
373 |
Q |
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| T |
51309936 |
atttagcagacactgcattgttggattgttcataagtttatgttaatttgtatatagcaagtatgtttatgtaaacttgttttcaatgtctagctctggt |
51309837 |
T |
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| Q |
374 |
cacaaaattatctctg |
389 |
Q |
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| T |
51309836 |
cacaaaattatctctg |
51309821 |
T |
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