View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7742_low_9 (Length: 301)
Name: NF7742_low_9
Description: NF7742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7742_low_9 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 9703 - 9413
Alignment:
| Q |
3 |
ttacttctatgacagttccgattattgttgtactagtaaactctcatgagatgcatttaataaaacgctttcattgctttctaatgatcattgttgtgat |
102 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9703 |
ttacttctatgacagttctgattattgttgtactagtaaactttcatgagatgcatttaataaaacgctttcattgctttctaatgatcattgttgtgat |
9604 |
T |
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| Q |
103 |
tattgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatgtgctaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603 |
tattgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatgtgctaa |
9504 |
T |
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| Q |
203 |
atatagagcaagtggagttcaagtagaacatgcattt---------gatgttatgagcaaagaagcaaatgtgaatgaaaatagttctgat |
284 |
Q |
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| T |
9503 |
agatagagcaagtggagttcaagtagaacatgcatttgatgcggatgatgttatgagcaaagaagcaaatgtgaatgaaaatagttctgat |
9413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 82 - 284
Target Start/End: Original strand, 44612425 - 44612638
Alignment:
| Q |
82 |
tctaatgatcattgttgtgattattgttgttttctttt--gttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggat |
179 |
Q |
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|||| |||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44612425 |
tctagtgatcattattgtgattattgttgtttttttttttgttttgcagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggat |
44612524 |
T |
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| Q |
180 |
gacattgtagatatatgtgctaaatatagagcaagtggagttcaagtagaacatgcatt---------tgatgttatgagcaaagaagcaaatgtgaatg |
270 |
Q |
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| T |
44612525 |
gacattgtagatatatgttctaaagatagagcaagtggagttcaagtagaacatgcatttgatgcggatgatgttatgagcaaagaagcaaatgtgaatg |
44612624 |
T |
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| Q |
271 |
aaaatagttctgat |
284 |
Q |
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|||||||||||||| |
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| T |
44612625 |
aaaatagttctgat |
44612638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 1992740 - 1992878
Alignment:
| Q |
104 |
attgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatgtgctaaa |
203 |
Q |
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| T |
1992740 |
attgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagctatatgtgctaaa |
1992839 |
T |
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| Q |
204 |
tatagagcaagtggagttcaagtagaacatgcatttgatg |
243 |
Q |
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| T |
1992840 |
gatagagcaagtgga-ttcaagtagaacatgcatttgatg |
1992878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 41318443 - 41318588
Alignment:
| Q |
99 |
tgattattgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatgtg |
198 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
41318443 |
tgattgttgttgttttcttttgttttgaagtctcatgaagaagccaaacgattccgatttaagatcattctaaattggaatgacattgtagatatatgtg |
41318542 |
T |
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| Q |
199 |
ctaaatatagagcaagtggagttcaagtagaacatgcatttgatgt |
244 |
Q |
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||||| | | |||||||||| ||||||| |||| |||| ||||||| |
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| T |
41318543 |
ctaaagacaaagcaagtggaattcaagttgaacgtgcagttgatgt |
41318588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 30938993 - 30938900
Alignment:
| Q |
103 |
tattgttgttttcttttgttttgtagtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatg |
196 |
Q |
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||||| ||||||||||||||||| || |||||||||| ||| | ||||||||||||||||| | ||||||||||||||||||||| ||||| |
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| T |
30938993 |
tattgctgttttcttttgttttgaagcttcatgaagaaaccatgtgattccgatttaaggtcatcctaaattgggatgacattgtagacatatg |
30938900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 188775 - 188821
Alignment:
| Q |
31 |
tgtactagtaaactctcatgagatgcatttaataaaacgctttcatt |
77 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
188775 |
tgtactagtaaactttgatgagatgcatttaataaaacgctttcatt |
188821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 43166443 - 43166361
Alignment:
| Q |
159 |
aaggtcattccaaattgggatgacattgtagatatatgtgctaaatatagagcaagtggagttcaagtagaacatgcatttgatg |
243 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||| || ||| | |||||||||| |||| |
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| T |
43166443 |
aaggtcatctcaaattgggatgacattttagatatatgtgctaa--agagagcaagtggaattaaagcaaaacatgcattggatg |
43166361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 43276351 - 43276275
Alignment:
| Q |
127 |
agtctcatgaagaagccaaacggttccgatttaaggtcattccaaattgggatgacattgtagatatatgtgctaaa |
203 |
Q |
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|||| ||| |||||||||| || ||| ||| |||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
43276351 |
agtcacattaagaagccaagcgattctaattcaagggcatttcaaattgggatggcaatgtagatatatgtgctaaa |
43276275 |
T |
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