View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7743_high_10 (Length: 255)

Name: NF7743_high_10
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7743_high_10
NF7743_high_10
[»] chr3 (3 HSPs)
chr3 (54-243)||(34760908-34761097)
chr3 (54-103)||(25447298-25447347)
chr3 (152-216)||(44014714-44014778)
[»] chr5 (2 HSPs)
chr5 (2-70)||(12595827-12595895)
chr5 (54-103)||(26516367-26516416)
[»] chr1 (3 HSPs)
chr1 (54-123)||(9572142-9572211)
chr1 (55-99)||(3495693-3495737)
chr1 (54-103)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (84-167)||(25422347-25422431)
chr7 (54-103)||(20526413-20526462)
chr7 (54-103)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (54-124)||(1402963-1403033)
chr6 (54-103)||(2735036-2735085)
[»] chr4 (2 HSPs)
chr4 (57-106)||(28300350-28300399)
chr4 (117-200)||(7367986-7368070)
[»] chr8 (2 HSPs)
chr8 (152-216)||(16162850-16162914)
chr8 (80-136)||(29592194-29592250)
[»] chr2 (1 HSPs)
chr2 (55-99)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 34760908 - 34761097
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacctt 153  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760908 gataaaataaagttaaactatgtttatataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacctt 34761007  T
Q  154 ctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggcaaaatatcagtaacactgccacaggtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34761008 ctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggcaaaatatcagtaacactgccactggtt 34761097  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 25447347 - 25447298
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||| ||||| |   ||||||||||||||||||||||||||||    
T  25447347 gataaaataaacttaaattgtttttgtataagctataaactgttttcata 25447298  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 44014778 - 44014714
Alignment:
Q  152 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 216  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  44014778 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 44014714  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 12595895 - 12595827
Alignment:
Q  2 cacttacagcataagtgtttatgaataaactaatattgtttctatnnnnnnngataaaataaagttaaa 70  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||    
T  12595895 cacttgcagcataagtgtttatgtataaactaatattgtttctataacaaaagataaaataaagttaaa 12595827  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 26516367 - 26516416
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  26516367 gataaaataaagtcaaactactttcatataagttataaactgttttcata 26516416  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 9572211 - 9572142
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttat 123  Q
    ||||||||||||||||| | | |||||||||||||||| | ||||||||| || |||| ||||| |||||    
T  9572211 gataaaataaagttaaattgcttttgtataagctataagccgttttcatatgccatcattgagaacttat 9572142  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 3495737 - 3495693
Alignment:
Q  55 ataaaataaagttaaactacgtttgtataagctataaactgtttt 99  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  3495737 ataaaataaagttaaattacgtttgtataacctataaattgtttt 3495693  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 48830179 - 48830130
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||||| ||||||  ||  ||||||||||||||||||||||||    
T  48830179 gataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 25422347 - 25422431
Alignment:
Q  84 agctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctca 167  Q
    ||||||||| |||||||| |||| ||||  ||||| |||||||||||||||||  ||||||||| | || || ||||||||||||    
T  25422347 agctataaattgttttcacaggctatcatggagagtttataaacatgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 20526413 - 20526462
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||||||||| || ||||||| | ||||||| |||||||||||    
T  20526413 gataaaataaagttaaattatgtttgtacatgctataagctgttttcata 20526462  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 22283847 - 22283798
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||||||    
T  22283847 gataaaataaagttaaattgtttttgtatcagctataaactgttttcata 22283798  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 1402963 - 1403033
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttata 124  Q
    ||||||||||||||||||||  ||  ||||||||||||| |||||||||| || ||||  |||| ||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttata 1403033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 2735036 - 2735085
Alignment:
Q  54 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 103  Q
    ||||||||||||||||| ||  ||||||||| |||||| |||||||||||    
T  2735036 gataaaataaagttaaattatttttgtataatctataagctgttttcata 2735085  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 28300399 - 28300350
Alignment:
Q  57 aaaataaagttaaactacgtttgtataagctataaactgttttcataggc 106  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||    
T  28300399 aaaataaagttaaattgtttttgtataagctataaactattttcataggc 28300350  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 7368070 - 7367986
Alignment:
Q  117 agcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctcacgaatgtttacgacagtatataaactcaaataa 200  Q
    ||||||||||||||||||||  ||||| ||||| || || ||||||||||||| |  ||||| | | ||| ||||||||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataa 7367986  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 16162850 - 16162914
Alignment:
Q  152 ttctcaaacagtctcacgaatgtttacgacagtatataaactcaaataatctaatccaaagaggc 216  Q
    ||||||||||||||||| | |||||| |  |||| |||||||||||||| | |||||||| ||||    
T  16162850 ttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacaggc 16162914  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 29592250 - 29592194
Alignment:
Q  80 tataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataa 136  Q
    |||||||||||| ||||||||||| || ||| | ||||||||||  |||||||||||    
T  29592250 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 29592194  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 44439462 - 44439418
Alignment:
Q  55 ataaaataaagttaaactacgtttgtataagctataaactgtttt 99  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||    
T  44439462 ataaaataaagttaaactgtttttgtataagctataaattgtttt 44439418  T

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