View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7743_high_2 (Length: 623)
Name: NF7743_high_2
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_high_2 |
 | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 25616646 - 25617248
Alignment:
| Q |
1 |
tttatgtagctgttatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggtaccgggttttctaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616646 |
tttatgtagctgttatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggtaccgggttttctaattg |
25616745 |
T |
|
| Q |
101 |
tttctggatttcattggtaaaattccaattagttaatagatataaatgagtttattgcacgaatgcttccaaaaacctaaaactatctctcggcaaggcc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616746 |
tttctggatttcattggtgaaattccaattagttaatagatataaatgagtttattgcacgaatgcttccaaaaacctaaaactatctctcggcaaggcc |
25616845 |
T |
|
| Q |
201 |
taacaatgatattatttatcttatcaacatgattataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616846 |
taacaatgatattatttatcttatcaacatgattataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatact |
25616945 |
T |
|
| Q |
301 |
ctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616946 |
ctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
25617045 |
T |
|
| Q |
401 |
ataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgctttcatccgtcttttgcatcgattttgttgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
25617046 |
ataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatccgttttttgcatcgattttgttgg |
25617145 |
T |
|
| Q |
501 |
nnnnnnnnnngtcttttattttctctttggcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggaca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25617146 |
ttttttttt--tcttttattttctctttggcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggaca |
25617243 |
T |
|
| Q |
601 |
caaaa |
605 |
Q |
| |
|
||||| |
|
|
| T |
25617244 |
caaaa |
25617248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 13299015 - 13299090
Alignment:
| Q |
325 |
ggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
400 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| ||||||| |||||| ||| || ||| ||||||||||| |
|
|
| T |
13299015 |
ggtttctgatctttaaaatcaccatcgctgtcacttttgcagtatgctttgtgcccacaaagagcttgataagatc |
13299090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25611218 - 25611271
Alignment:
| Q |
1 |
tttatgtagctgttatgattgatgatgctttagtggttgcatggtatgtgaatg |
54 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||| ||||||||||| |
|
|
| T |
25611218 |
tttatgtagctgttatgattgatgttgtttttatggttgcattgtatgtgaatg |
25611271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 440
Target Start/End: Original strand, 13261127 - 13261254
Alignment:
| Q |
312 |
tgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttt |
411 |
Q |
| |
|
|||| ||| ||| |||||||||||||| |||||| |||||||||| ||||| |||||| | |||| ||| | ||| ||||||||||| ||||| ||| |
|
|
| T |
13261127 |
tgggcagtgaaaaggtttctgatctattaaatcaccatcattgtctcttttgcagtatactctgtgcccaccaagagcttgataagatcggaacat-ttt |
13261225 |
T |
|
| Q |
412 |
tttgcacctcacacatttgaacctagctt |
440 |
Q |
| |
|
| ||||||| |||| |||||||| |||| |
|
|
| T |
13261226 |
tccgcacctctcacagttgaacctggctt |
13261254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 6269 - 5660
Alignment:
| Q |
1 |
tttatgtagctgttatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggtaccgggttttctaattg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6269 |
tttatgcagctgttatgattgatgatgctttagtggttacatggtatgtgaatgatactgcattagacatcaaagtagatggtaccgggtttactaattg |
6170 |
T |
|
| Q |
101 |
tttctggatttcattggtaaaattccaattagttaatagatataaatgagtttattgcacgaatgcttccaaaaacctaaaactatctctcggcaaggcc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169 |
tttctggatttcattggtgaaattccaattagttaatagatataaatgagtttattgcacgaatgcttccaaaaacctaaaactatctctcggcaaggcc |
6070 |
T |
|
| Q |
201 |
taacaatgatattatttatcttatcaacatgattataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069 |
taacaatgatattatttatcttatcaacatgattataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatact |
5970 |
T |
|
| Q |
301 |
ctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5969 |
ctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
5870 |
T |
|
| Q |
401 |
ataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgctttcatccgtcttttgcatcgattttgttgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
5869 |
ataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatctgttttttgcatcgattttgttgg |
5770 |
T |
|
| Q |
501 |
----nnnnnnnnnngtcttttattttctctttggcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtg |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5769 |
ttttttttttctttctcttttattttctctttggcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtg |
5670 |
T |
|
| Q |
597 |
gacacaaaac |
606 |
Q |
| |
|
|||||||||| |
|
|
| T |
5669 |
gacacaaaac |
5660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University