View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7743_low_10 (Length: 381)
Name: NF7743_low_10
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 48011600 - 48011239
Alignment:
| Q |
18 |
atttttgttacttatggttgttcataatttttcagaacaatgttgctgggacaaaccaacaaaattatgtaggaaatatggtagattattcacaaggttt |
117 |
Q |
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| T |
48011600 |
atttttgttacttatggttgttcataatttttcagaacaatgttgttgggacaaaccaacaaaattatgtaggaaatatggtagattattcacaaggttt |
48011501 |
T |
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| Q |
118 |
ttcagcaactaat---tattttgaggtaatttgcttgatatttgtactactctatagtttacactttgattttgtatttgctaaaattgttaatctgtgt |
214 |
Q |
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| T |
48011500 |
ttcagcaactaataattattttgaggtaatttgcttgatatttgtactactctatagtttacactttgattttgtatttgctaaaattgtt----tgtgt |
48011405 |
T |
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| Q |
215 |
tatttgtagggaaaatcctcataccaagaagaaaaattcggttttttacaaccacctctctcaaaaaatgatcttcaaggcaacaagtaagttgatatta |
314 |
Q |
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| T |
48011404 |
tatttgtagggaaaatcatcataccaagaagaaaaattcggttttttacaaccacctctctcaaaaaatgatcttcaaggcaacaagtaagttgatatta |
48011305 |
T |
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| Q |
315 |
ttttgtgcattagaagaaaattttaccagaca---tagtgtgttcagc-ttaatgatttgcattct |
376 |
Q |
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| T |
48011304 |
ttttgtgcattagaagaaaattttactagacatagtagtgtgttcagctttaatgatttgcattct |
48011239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 40503017 - 40502938
Alignment:
| Q |
254 |
ggttttttacaaccacctctctca-aaaaatgatcttcaaggcaacaagtaagttgatattattttgtgcattagaagaa |
332 |
Q |
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| T |
40503017 |
ggtttattacaaccatctctatcagaaaaataaacttcaaggcaacaagttagttcatcttcttttgtgcattagtagaa |
40502938 |
T |
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