View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7743_low_13 (Length: 286)

Name: NF7743_low_13
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7743_low_13
NF7743_low_13
[»] chr4 (1 HSPs)
chr4 (68-248)||(29945854-29946026)
[»] chr2 (5 HSPs)
chr2 (108-248)||(29571458-29571593)
chr2 (108-248)||(29578247-29578382)
chr2 (108-248)||(29580802-29580937)
chr2 (68-248)||(29610054-29610226)
chr2 (197-246)||(20699215-20699264)
[»] chr1 (7 HSPs)
chr1 (200-249)||(4014680-4014729)
chr1 (200-247)||(4571208-4571255)
chr1 (200-249)||(4016514-4016563)
chr1 (200-247)||(21855098-21855145)
chr1 (82-135)||(4009192-4009245)
chr1 (76-135)||(10219423-10219482)
chr1 (200-240)||(17563902-17563942)
[»] chr7 (12 HSPs)
chr7 (196-247)||(29921716-29921767)
chr7 (201-246)||(29881565-29881610)
chr7 (200-240)||(29476037-29476077)
chr7 (201-246)||(29872022-29872067)
chr7 (203-247)||(19887441-19887485)
chr7 (200-247)||(19779898-19779945)
chr7 (206-241)||(29445359-29445394)
chr7 (200-247)||(29874828-29874875)
chr7 (200-246)||(19350826-19350872)
chr7 (200-249)||(19358204-19358253)
chr7 (206-247)||(29107119-29107160)
chr7 (200-245)||(29459762-29459807)
[»] chr5 (1 HSPs)
chr5 (200-247)||(24330614-24330661)
[»] chr8 (1 HSPs)
chr8 (206-247)||(27618724-27618765)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 29946026 - 29945854
Alignment:
Q  68 atatagatttttctcaatataagccacatgctcgatatacaattgaattaacctaagcaataataaaatagaatatccacacaatcgtttattataaagc 167  Q
    |||||||||||| ||||||||||||||| | |  | |||  ||| ||||| |||||||||||||  |||||||||| |||||||||| || ||||||| |    
T  29946026 atatagattttt-tcaatataagccacacgatgtagata--attaaattagcctaagcaataatgcaatagaatattcacacaatcgattcttataaaac 29945930  T
Q  168 aacatataacatatgtacataaattcagacataagagaaacttactttcaaaaaattggaactaagctttcaacataatct 248  Q
    |||||| | || ||| ||||||||||  |||    || ||||||||||||||| |||||||||||||||||||||||||||    
T  29945929 aacataca-cagatgaacataaattcgaaca----agtaacttactttcaaaatattggaactaagctttcaacataatct 29945854  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 29571458 - 29571593
Alignment:
Q  108 aattgaattaacctaagcaataataaaatagaatatccacacaatcgtttattataaagcaacatataacatatgtacataaattcagacataagagaaa 207  Q
    |||| ||||| |||||||||||||  |||||||||| |||||||| | || ||||||| ||||||| | || ||| ||||||||||| ||||    | ||    
T  29571458 aattaaattagcctaagcaataatgcaatagaatattcacacaatggattcttataaaacaacataca-cagatgaacataaattcaaacat----gtaa 29571552  T
Q  208 cttactttcaaaaaattggaactaagctttcaacataatct 248  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29571553 cttactttcaaaatattggaactaagctttcaacataatct 29571593  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 29578247 - 29578382
Alignment:
Q  108 aattgaattaacctaagcaataataaaatagaatatccacacaatcgtttattataaagcaacatataacatatgtacataaattcagacataagagaaa 207  Q
    |||| ||||| |||||||||||||  |||||||||| |||||||| | || ||||||| ||||||| | || ||| ||||||||||| ||||    | ||    
T  29578247 aattaaattagcctaagcaataatgcaatagaatattcacacaatggattcttataaaacaacataca-cagatgaacataaattcaaacat----gtaa 29578341  T
Q  208 cttactttcaaaaaattggaactaagctttcaacataatct 248  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29578342 cttactttcaaaatattggaactaagctttcaacataatct 29578382  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 29580802 - 29580937
Alignment:
Q  108 aattgaattaacctaagcaataataaaatagaatatccacacaatcgtttattataaagcaacatataacatatgtacataaattcagacataagagaaa 207  Q
    |||| ||||| |||||||||||||  |||||||||| |||||||| | || ||||||| ||||||| | || ||| ||||||||||| ||||    | ||    
T  29580802 aattaaattagcctaagcaataatgcaatagaatattcacacaatggattcttataaaacaacataca-cagatgaacataaattcaaacat----gtaa 29580896  T
Q  208 cttactttcaaaaaattggaactaagctttcaacataatct 248  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29580897 cttactttcaaaatattggaactaagctttcaacataatct 29580937  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 248
Target Start/End: Original strand, 29610054 - 29610226
Alignment:
Q  68 atatagatttttctcaatataagccacatgctcgatatacaattgaattaacctaagcaataataaaatagaatatccacacaatcgtttattataaagc 167  Q
    |||||||||||| ||||||||||||||| | |  | |||  ||| ||||| |||||||||||||  |||||||||| |||||||  | || ||||||| |    
T  29610054 atatagattttt-tcaatataagccacacgatgtagata--attaaattagcctaagcaataatgcaatagaatattcacacaaaggattcttataaaac 29610150  T
Q  168 aacatataacatatgtacataaattcagacataagagaaacttactttcaaaaaattggaactaagctttcaacataatct 248  Q
    |||||| | || ||| ||||||||||| | |     | ||||||||||||||| |||||||||||||||||||||||||||    
T  29610151 aacataca-cagatgaacataaattcaaatag----gtaacttactttcaaaatattggaactaagctttcaacataatct 29610226  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 20699215 - 20699264
Alignment:
Q  197 cataagagaaacttactttcaaaaaattggaactaagctttcaacataat 246  Q
    |||||||| |||||||||||||||| ||| |||||| |||||||||||||    
T  20699215 cataagaggaacttactttcaaaaagttgaaactaaactttcaacataat 20699264  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 4014680 - 4014729
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4014680 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctt 4014729  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 4571255 - 4571208
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571255 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 4571208  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 4016514 - 4016563
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctt 249  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4016514 aagagaaacttactttcaaaaaattggaactaaactttcaacataatctt 4016563  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 21855098 - 21855145
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21855098 aagagaaacttactttcaaaaacttggaactaagctttcaacataatc 21855145  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 4009192 - 4009245
Alignment:
Q  82 caatataagccacatgctcgatatacaattgaattaacctaagcaataataaaa 135  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  4009192 caatataagccacatgctcggtatacaattagattaacctaagcaatcataaaa 4009245  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 10219482 - 10219423
Alignment:
Q  76 ttttctcaatataagccacatgctcgatatacaattgaattaacctaagcaataataaaa 135  Q
    ||||||||||||||| |||||||||  ||||||||| |||||| ||||||||| ||||||    
T  10219482 ttttctcaatataagacacatgctcagtatacaattaaattaagctaagcaatcataaaa 10219423  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 17563902 - 17563942
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaa 240  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  17563902 aagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 29921716 - 29921767
Alignment:
Q  196 acataagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  29921716 acataataggaacttactttcaaaaaattggaactaagctttcaacataatc 29921767  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 29881610 - 29881565
Alignment:
Q  201 agagaaacttactttcaaaaaattggaactaagctttcaacataat 246  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  29881610 agaggaacttactttcaaaaaattgaaactaagctttcaacataat 29881565  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 29476037 - 29476077
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaa 240  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  29476037 aagagaaacttactttcaaaaaattgaaactaagctttcaa 29476077  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 29872067 - 29872022
Alignment:
Q  201 agagaaacttactttcaaaaaattggaactaagctttcaacataat 246  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||    
T  29872067 agaggaacttactttcaaaaaattgaaactaaactttcaacataat 29872022  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 19887441 - 19887485
Alignment:
Q  203 agaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    ||||||||||| |||||| |||| |||||||||||||||||||||    
T  19887441 agaaacttactctcaaaagattgaaactaagctttcaacataatc 19887485  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 19779945 - 19779898
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  19779945 aagagaaacttactctcaaaaggttgaaactaagctttcaacataatc 19779898  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 29445359 - 29445394
Alignment:
Q  206 aacttactttcaaaaaattggaactaagctttcaac 241  Q
    |||||||||||||||||||| |||||||||||||||    
T  29445359 aacttactttcaaaaaattgaaactaagctttcaac 29445394  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 29874875 - 29874828
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    ||||||||||||||||||| ||||   |||||||||||||||||||||    
T  29874875 aagagaaacttactttcaacaaatcaaaactaagctttcaacataatc 29874828  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 19350826 - 19350872
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 246  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||    
T  19350826 aagagaaacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 19358253 - 19358204
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctt 249  Q
    ||||||||||||||||||| |   || |||||||||||||||||||||||    
T  19358253 aagagaaacttactttcaagaggatgaaactaagctttcaacataatctt 19358204  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 29107160 - 29107119
Alignment:
Q  206 aacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  29107160 aacttactttcaaaatattgaaactaagctttcaacgtaatc 29107119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 29459762 - 29459807
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataa 245  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||||    
T  29459762 aagaggaacttactttaaaaaaattgaaattaagctttcaacataa 29459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 24330614 - 24330661
Alignment:
Q  200 aagagaaacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  24330614 aagagaaacttactttcaaaaacttggaactaagctttcaacataatc 24330661  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 27618765 - 27618724
Alignment:
Q  206 aacttactttcaaaaaattggaactaagctttcaacataatc 247  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatc 27618724  T

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