View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7743_low_14 (Length: 256)
Name: NF7743_low_14
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_low_14 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 21669597 - 21669431
Alignment:
| Q |
1 |
tttatgataaccaaaagagtgttgtgcaaaaaatattaataaaatctgaaataagtgtttctacattttttgttaaagtacttcctagtacaatgaggta |
100 |
Q |
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| T |
21669597 |
tttatgataaccaaaagagtgtagtgcaaaaaatattaataaaatcttaaataagtgtttctacattttttgttaaagtagttcctagtacaatgaggta |
21669498 |
T |
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| Q |
101 |
aactatatgtccaaatgaaacaatcaaacac-aaaatacgaatatgctcattcaaaatgattaagga |
166 |
Q |
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| T |
21669497 |
aactatatgtccaaatgaaacaatcaaacacaaaaataggaatatgttcattcaaaatgaataagga |
21669431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21677013 - 21676886
Alignment:
| Q |
1 |
tttatgataaccaaaagagtgttgtgcaaaaaatattaataaaatctgaaataagtgtttctacattttttgttaaagtacttcctagtacaatgaggta |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21677013 |
tttatgataaccaaaagagtgtagtgcaaaaaatattaataaaatcttaaataagtgtttctacattttttgttaaagtagttcctagtacaatgaggta |
21676914 |
T |
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| Q |
101 |
aactatatgtccaaatgaaacaatcaaa |
128 |
Q |
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| T |
21676913 |
aactatatgtccaaatgaaacaatcaaa |
21676886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 21669391 - 21669313
Alignment:
| Q |
162 |
aaggaaggataatggtattgtagttctttctttgtctctagattatcttaggttttgagtgatatcctatattccttag |
240 |
Q |
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| T |
21669391 |
aaggaaggataatggtattgtagttctttctttgtctctagattatcttaggttttgagtgatctcctatattccttag |
21669313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 21676319 - 21676201
Alignment:
| Q |
49 |
aaataagtgtttctacattttttgttaaagtacttcctagtacaatgaggtaaactatatgtccaaatgaaacaatcaaacac-aaaatacgaatatgct |
147 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||| | |
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| T |
21676319 |
aaatatgtgtttctacattttttcttaaagtagttcctagtacaatgaggtaaactatatgtccaaatgaaacaattaaaaacaaaaattggaatatggt |
21676220 |
T |
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| Q |
148 |
cattcaaaatgattaagga |
166 |
Q |
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| T |
21676219 |
cattcaaaatgaataagga |
21676201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 21676161 - 21676083
Alignment:
| Q |
162 |
aaggaaggataatggtattgtagttctttctttgtctctagattatcttaggttttgagtgatatcctatattccttag |
240 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
21676161 |
aaggaagaataatggtattgtagttctttctttgtctctagattatcttaggttttgaatgatgtcctatattccttag |
21676083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 21682506 - 21682428
Alignment:
| Q |
162 |
aaggaaggataatggtattgtagttctttctttgtctctagattatcttaggttttgagtgatatcctatattccttag |
240 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
21682506 |
aaggaagtataatggtattgtagttctttctttgtctctagattatcttaggttttgaatgatgtcctatattccttag |
21682428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 81784 - 81703
Alignment:
| Q |
86 |
tagtacaatgaggtaaactatatgtccaaatgaaacaatca-aacacaaaatacgaatatgctcattcaaaatgattaagga |
166 |
Q |
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||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||||||||||| ||||| |||||| |
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| T |
81784 |
tagtacaatgaggtaaactatctgtccaaatgaaacgatcataaagaaaaatagaaatatgctcattcacaatgaataagga |
81703 |
T |
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