View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7743_low_3 (Length: 602)
Name: NF7743_low_3
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_low_3 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 29745588 - 29745831
Alignment:
| Q |
1 |
aaattggaaattcaaagaaataaaattgtcctaaaactaccattgcatggtatagaaagtatctga-catgatatcattgtagatttgtagtatagtatt |
99 |
Q |
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| T |
29745588 |
aaattggaaattcaaagaaataaaattgtcctaacactaccattgcatggtatagaaagtatctgaacatgatatcattgtagatttgtagtatagtatt |
29745687 |
T |
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| Q |
100 |
tagttctaatttccacctgttatatgagcacaaatcaaggggctctt-catttgaaaatcactaatgaattaagttgtctggtctaaccacaaattaata |
198 |
Q |
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| T |
29745688 |
tagttctaatttccacctgttatatgaacacaaatcaagcagctctttcatttgaaaatcactagtgaatcaagttgtctggtctaaccacaaattaata |
29745787 |
T |
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| Q |
199 |
acgcataaacacacctttagagcaccaaatagtagcagcaaata |
242 |
Q |
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| T |
29745788 |
acgcataaacacacctttagagcaccaaatagtagcagcaaata |
29745831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 502 - 585
Target Start/End: Original strand, 29746492 - 29746575
Alignment:
| Q |
502 |
ttatgattaaaatgaatcataaacacaaaaaccttgtgagcaaacaatccaaacaacattcaacaaaaatcgcatgaatctcct |
585 |
Q |
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| T |
29746492 |
ttatgattaaaatgaatcataaacacaaaaaccttgtgagcaaacaatccaaacaacattcaacaaaaatcgcatgaatctcct |
29746575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 29746323 - 29746368
Alignment:
| Q |
347 |
aaagaatttgcacgctttactcctagaaaaatcaataattgtgtta |
392 |
Q |
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| T |
29746323 |
aaagaatttgcatgctttactcctagaaaaatcaatagttgtgtta |
29746368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15843003 - 15842763
Alignment:
| Q |
1 |
aaattggaaattcaaagaaataaaattgtcctaaaactaccattgcatggtatagaaagtatctgacatgatatcattgtagatttgtagtatagtattt |
100 |
Q |
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| T |
15843003 |
aaattggaaattcaaagatataaaattgtcctaaaactaccattgcgtggtatagaaagcatctgacatgatatcatt--------gtagtatagtgttt |
15842912 |
T |
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| Q |
101 |
agttctaatttccacctgttatatgagcacaaatcaaggggctc-ttcatttgaaa------atcactaatgaattaagttgtctggtctaaccacaaat |
193 |
Q |
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| T |
15842911 |
agttctaatttctacctgttataagaacacaaatcaagcaactctttcatttgaaaatcaatatcaatagtgaagcaagttgtctggtctaaccacaaat |
15842812 |
T |
|
| Q |
194 |
taataacgcataaacacacctttagagcaccaaatagtagcagcaaata |
242 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15842811 |
taacgacgcataaacacacctttagagcaccaaatagtagcagcaaata |
15842763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 379
Target Start/End: Original strand, 45038280 - 45038403
Alignment:
| Q |
256 |
tctatggctgtgagaagcatctttgaaatatacatgctcatatatttatacaaatatcaaataggaaataaaagatcaatagatcaatgccaaagaattt |
355 |
Q |
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||||||||||| ||||||||||||||| ||||| ||| | ||||| ||||| || |||||||||||| || | ||||||||||||| |||||||||||| |
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| T |
45038280 |
tctatggctgtaagaagcatctttgaagtatacctgccgagatattaatacatatgtcaaataggaaagaataaatcaatagatcaaagccaaagaattt |
45038379 |
T |
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| Q |
356 |
gcacgctttactcctagaaaaatc |
379 |
Q |
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| T |
45038380 |
gcacgctttactcctaggaaaatc |
45038403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 1862 - 1789
Alignment:
| Q |
502 |
ttatgattaaaatgaatcataaacacaaaaaccttgtgagcaaacaatcc--aaacaacattcaacaaaaatcg |
573 |
Q |
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||||||| || ||||||||||||| |||||| ||| |||| ||||||||| ||||||||||||||||| |||| |
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| T |
1862 |
ttatgataaacatgaatcataaacccaaaaatcttatgagaaaacaatccaaaaacaacattcaacaaagatcg |
1789 |
T |
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