View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7743_low_6 (Length: 427)
Name: NF7743_low_6
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 15091117 - 15090711
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15091117 |
tggacatcgcgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttc |
15091018 |
T |
|
| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15091017 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
15090918 |
T |
|
| Q |
208 |
acacactatcaacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgt |
307 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
15090917 |
acacactgccaacactggaaattggcgtgacaagaatgtgaggagtctgtcttcacaggagattgctgaccgtcgttaaaaaggactctgttttaaatgt |
15090818 |
T |
|
| Q |
308 |
ggaggtccgtatcatccacgtcatcaatgtccagataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttga |
407 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15090817 |
ggaggcccgtatcatcctcgtcatcaatgtccggataaaaatttgcgtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttga |
15090718 |
T |
|
| Q |
408 |
atgatga |
414 |
Q |
| |
|
||||||| |
|
|
| T |
15090717 |
atgatga |
15090711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 32 - 414
Target Start/End: Original strand, 43010593 - 43010969
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
|
| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43010786 |
T |
|
| Q |
232 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcatccacgtcat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
43010787 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcatccacgtcat |
43010886 |
T |
|
| Q |
332 |
caatgtccagataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43010887 |
caatgtccggataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
43010969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 32 - 414
Target Start/End: Original strand, 43012890 - 43013266
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
|
| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43012990 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtgaaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43013083 |
T |
|
| Q |
232 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcatccacgtcat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43013084 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcatccacgtcat |
43013183 |
T |
|
| Q |
332 |
caatgtccagataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43013184 |
caatgtccggataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
43013266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 25203934 - 25203528
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25203934 |
tggacatcgagaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttc |
25203835 |
T |
|
| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
25203834 |
gtaataacaaagacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgttagacaaaacaaaac |
25203735 |
T |
|
| Q |
208 |
acacactatcaacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgt |
307 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25203734 |
acacactaccaacattggaaattggcgtgacaagaatgtgaggaatctgtcttcacaggagattgctgaccgtcgtaaaaaaggactctgttttaaatgt |
25203635 |
T |
|
| Q |
308 |
ggaggtccgtatcatccacgtcatcaatgtccagataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttga |
407 |
Q |
| |
|
||||| ||||||||||| ||| |||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25203634 |
ggaggcccgtatcatcctcgttatcaatgtacggataaaaatttgcgtgttatggtgcttgaggatgattccgaagatgaaaatgaagtaagagtgttga |
25203535 |
T |
|
| Q |
408 |
atgatga |
414 |
Q |
| |
|
||||||| |
|
|
| T |
25203534 |
atgatga |
25203528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 35074796 - 35075035
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
35074796 |
tggacatcgcgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttc |
35074895 |
T |
|
| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35074896 |
ataataacaaagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgttcgacaaaacaaaac |
35074995 |
T |
|
| Q |
208 |
acacactatcaacacttcaaattggcgtgacaagaatgtg |
247 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
35074996 |
acacactgccaacactggaaattggcgtgacaagaatgtg |
35075035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 32 - 414
Target Start/End: Complemental strand, 25676775 - 25676399
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
|
| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
25676582 |
T |
|
| Q |
232 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcatccacgtcat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25676581 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcatccacgtcat |
25676482 |
T |
|
| Q |
332 |
caatgtccagataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25676481 |
caatgtccggataaaaatttgagtgttatggtgcttgaggatgattctgaagatgaaaatgaagtaagagtgttgaatgatga |
25676399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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