View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7743_low_7 (Length: 407)
Name: NF7743_low_7
Description: NF7743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7743_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 434589 - 434350
Alignment:
| Q |
1 |
ttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaaca |
100 |
Q |
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| T |
434589 |
ttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaaca |
434490 |
T |
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| Q |
101 |
taaaatgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttaggtcagttctttttcataagtataatttaagtc-- |
198 |
Q |
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| T |
434489 |
taaaatgaagattgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttaggtcagttctttttcctaagtataatttaagtctt |
434390 |
T |
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| Q |
199 |
nnnnnnnnnaagttcttttacaattgaggaagccatttcc |
238 |
Q |
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| T |
434389 |
ttttttttaaagttcttttacaattgaggaagccatttcc |
434350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 235 - 404
Target Start/End: Complemental strand, 434316 - 434147
Alignment:
| Q |
235 |
ttccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtc |
334 |
Q |
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| T |
434316 |
ttccctcagggagctttaatctcctggcaaaagtggaattttcttccacttgacccaagatgacagatttatgattaagacagtcaaaaaatccgaagtc |
434217 |
T |
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| Q |
335 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
404 |
Q |
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| T |
434216 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtataatgtacatct |
434147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 237 - 404
Target Start/End: Original strand, 32938459 - 32938626
Alignment:
| Q |
237 |
ccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaa |
336 |
Q |
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| T |
32938459 |
ccctcagggagctttcatctcctggcaaaagtggaagcttcttctacttgacccaagatgatagatttatgataaagacggtgaaaaaatccgaagtcaa |
32938558 |
T |
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| Q |
337 |
ggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
404 |
Q |
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| T |
32938559 |
ggtttgtttttggttgttaaattgaaaacatttttccatgtttgttcaaactagtatgacgtacatct |
32938626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 43485776 - 43485622
Alignment:
| Q |
1 |
ttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaaca |
100 |
Q |
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|||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||| || |
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| T |
43485776 |
ttataccattgccattgaattgagctttagtctcaactgaatcaaatttacactgagctgtgtaattctggattaaggattaaaatttgacatgttacca |
43485677 |
T |
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| Q |
101 |
taaaatgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgta |
155 |
Q |
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| T |
43485676 |
taaattgaagtttgtgtaagccaaatatatactgtaatttgattcaaattatgta |
43485622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 47870681 - 47870624
Alignment:
| Q |
20 |
ttgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaag |
77 |
Q |
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|||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
47870681 |
ttgggctttagtctcaattgaatcaaattttcactgaattatgtaattctggattaag |
47870624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 24524401 - 24524459
Alignment:
| Q |
282 |
acttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaaggtt |
340 |
Q |
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| T |
24524401 |
acttgacccaagatgacagattcatgattaagacagtgaagaaatctgaagtcaaggtt |
24524459 |
T |
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