View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7744_high_2 (Length: 518)
Name: NF7744_high_2
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7744_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 135 - 503
Target Start/End: Complemental strand, 29839977 - 29839610
Alignment:
| Q |
135 |
ttccaaactcccgaacattagatataatcattcaatcttaatagacactcacatttctcgttcatgtgtcattgtggttcaactttgtannnnnnnnnat |
234 |
Q |
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| T |
29839977 |
ttccaaacttccgaacattagatataatcattcaaccttaatagacactcacatttctcgttcatgtgtcattgtggttcaactttgtatttttttt-at |
29839879 |
T |
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| Q |
235 |
atcacaccacccctttcacaccttaatataagaaattgttttctttgattagaaccaagataagactttgaaataattatagcaaaacataacttagtcg |
334 |
Q |
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| T |
29839878 |
atcacaccacccctttcacaccttaatataagaaattgttttctttgattaaaaccaagataagactttgaaataattatagcaaaacataacttagtcg |
29839779 |
T |
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| Q |
335 |
cttcacaatgaccccaatgcaaaaaattatcacgggaggtaaatttctttttagtgaaaaagttcttcacaaaatcaagttcctcaacaactggttttgc |
434 |
Q |
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| T |
29839778 |
cttcacaatgaccccaatccaacaaatcatcacgggaggtaaatttctttttagtgaaaaagttcttcacaaaatcaagttcctcaacaactggttttgc |
29839679 |
T |
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| Q |
435 |
tacgtccggtgtcatcttaattgggagttccgccataaattaaactataaaattgacccgtcatgatgt |
503 |
Q |
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| T |
29839678 |
tacgtccggtgtcatcttaattgggagttctgctataaattaaactataaaattgacccgtcatgatgt |
29839610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 29840096 - 29840014
Alignment:
| Q |
32 |
aaactcacaaacatgttcattctgatctcactaacaagttcttgtcatccacatataaacgaacgacaacaagatgaccttct |
114 |
Q |
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| T |
29840096 |
aaactcacaaacatgttcattctgatctcactaacaagttcttatcatccacatatagacgaacgacaacaagatgaccttct |
29840014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 2032058 - 2032087
Alignment:
| Q |
397 |
ttcttcacaaaatcaagttcctcaacaact |
426 |
Q |
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| T |
2032058 |
ttcttcacaaaatcaagttcctcaacaact |
2032087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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