View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7744_high_5 (Length: 269)
Name: NF7744_high_5
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7744_high_5 |
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| [»] scaffold0884 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 43254983 - 43254737
Alignment:
| Q |
5 |
gtttggtgttattgtttttgcgtgttgtttatgctgtaccgtgtttcttgtttcatgtactgtttttaagtttagttagttttaagccgttgcctaaatg |
104 |
Q |
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| T |
43254983 |
gtttggtgttattgtttttgtatgttatttatgttgtgctgtgtttcttggttcatgtaatgtttttaagtttagttagttttatgccgttgcctaaatg |
43254884 |
T |
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| Q |
105 |
gagtttggatcgtaggtatcacacaaggtttgttggcctgtatgaggatgaatctaggttcactaactttaccatttatcaactgannnnnnnccagcga |
204 |
Q |
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| T |
43254883 |
gagtttggatcgtaggtatcacacaaggtttgttggcctatatgaggatgaatctaggttcactaactttgccatttatcaactgatttttgtccagc-- |
43254786 |
T |
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| Q |
205 |
gacaaagtgaacaaatccgagaccatgtgtagtcgaaatgtgcgtgatg |
253 |
Q |
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| T |
43254785 |
gacaaagtgaacaaatctgagaccatgtgtagtcgaaatgtgcgtgatg |
43254737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 22669022 - 22668889
Alignment:
| Q |
119 |
ggtatcacacaaggtttgttggcctgtatgaggatgaatctaggttcactaactttaccatttatcaactgannnnnnnccagcgagacaaagtgaacaa |
218 |
Q |
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| T |
22669022 |
ggtatcacacaagctttattggcctctatgagaatgaatccagtttcactacctttgccc---atcaattgatttttgtccagcatgacaaagtgaacaa |
22668926 |
T |
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| Q |
219 |
atccgagacc-atgtgtagtcgaaatgtgcgtgatgt |
254 |
Q |
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| T |
22668925 |
atccgagaccaaagtgtagtagaaatgggcgtgatgt |
22668889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 11896363 - 11896498
Alignment:
| Q |
119 |
ggtatcacacaaggtttgttggcctgtatgaggatgaatctaggttcactaactttaccatttatcaactgannnnnnnccagcgagacaaagtgaacaa |
218 |
Q |
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| T |
11896363 |
ggtatcacacaagctttattggcctctatgagaatgaatccagtttcactaccttttccctttatcaattgttttttgtccagcatgacaaagtgaacaa |
11896462 |
T |
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| Q |
219 |
atccgagaccatgtgtagtcgaaatgtgcgtgatgt |
254 |
Q |
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| T |
11896463 |
attcgagaccaagtgtagtcgaaatgggcgtgatgt |
11896498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0884 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0884
Description:
Target: scaffold0884; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 986 - 851
Alignment:
| Q |
119 |
ggtatcacacaaggtttgttggcctgtatgaggatgaatctaggttcactaactttaccatttatcaactgannnnnnnccagcgagacaaagtgaacaa |
218 |
Q |
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| T |
986 |
ggtatcacacaagctttattggcctctatgggaatgaatccagtttcactacctttgcacttcatcaattgatttttgtccagcatgacaaagtgaacaa |
887 |
T |
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| Q |
219 |
atccgagaccatgtgtagtcgaaatgtgcgtgatgt |
254 |
Q |
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| T |
886 |
atccgagaccaagtgtagtcgaaatgggcgtgatgt |
851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 18621207 - 18621397
Alignment:
| Q |
64 |
ctgtttttaagtttagttagttttaagccgttgcctaaatggagtttggatcgtaggtatcacacaaggtttgttggcctgtatgaggatgaatctaggt |
163 |
Q |
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| T |
18621207 |
ctgtttttatgtttagttggttttaagtctttgtctcatctgagtttgatttgttggtatcacacaagctttattgtcctctatgaggatgaatccaggt |
18621306 |
T |
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| Q |
164 |
tcactaactttaccatttatcaactgannnnnnnccagcgagacaaagtgaacaaatccgagaccatgtgtagtcgaaatgtgcgtgatgt |
254 |
Q |
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| T |
18621307 |
tcactacctttgccctttatcaattattttttgtccagaatgacaaagtgaaaaattccgagaccaagtgtagtcgaaatgagcgtgatgt |
18621397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 27429723 - 27429771
Alignment:
| Q |
205 |
gacaaagtgaacaaatccgagaccatgtgtagtcgaaatgtgcgtgatg |
253 |
Q |
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| T |
27429723 |
gacaaagtgaaaaaatccgagaccaaatatagtcgaaatgtgcgtgatg |
27429771 |
T |
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