View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7744_low_13 (Length: 250)
Name: NF7744_low_13
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7744_low_13 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0078 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 26992370 - 26992617
Alignment:
| Q |
10 |
aagaatatatggggtgtaattagaaaaattcaaacttatatgnnnnnnnnnnnnaatgacaatactgttgctttgctggctgtcatatttattagtattt |
109 |
Q |
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| T |
26992370 |
aagaatatatggggtgtaattagaaaaattcaaacttatatgtttttattttttaatgacaatactgttgctttgctggctctcatatttattagtattt |
26992469 |
T |
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| Q |
110 |
gtttctatcttttggtcaatagtctctac-------gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgactta |
202 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992470 |
gtttctatcttttggtcaatagtccctacttcttaagacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgactta |
26992569 |
T |
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| Q |
203 |
gtttattttctttctttgtaaggctagtatttgcaactgaataaaata |
250 |
Q |
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| T |
26992570 |
gtttattttctttctttgtaaggctagtatttgcaactgaataaaata |
26992617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 4832334 - 4832399
Alignment:
| Q |
139 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
204 |
Q |
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| T |
4832334 |
gacttattagtgggacttagttagttttctccacattccacgtttttgttagtggactgagttagt |
4832399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 1751456 - 1751391
Alignment:
| Q |
139 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
204 |
Q |
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| T |
1751456 |
gacttattagtgggacttagttagttttctccacattccacgtttctgttagtggactgagttagt |
1751391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 45000181 - 45000058
Alignment:
| Q |
88 |
gctgtcatatttattagtatttgtttctatcttttggtcaatagtctctac-------gacttattactgggacttggttagttttctccacattccacg |
180 |
Q |
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| T |
45000181 |
gctgtcatagttattagtatctgtttctatctttaagttaataatccctacttcttaggatttattagtgggacttagttagttttctccacattccacg |
45000082 |
T |
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| Q |
181 |
tttgtgttagtggagtgacttagt |
204 |
Q |
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||| |||||||||| ||| ||||| |
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| T |
45000081 |
tttctgttagtggactgagttagt |
45000058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 1755809 - 1755750
Alignment:
| Q |
142 |
ttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgactt |
201 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1755809 |
ttattagtgggacttaattagttttctccacattccacgtttttgttagtggagtaactt |
1755750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 19286 - 19351
Alignment:
| Q |
139 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
204 |
Q |
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| T |
19286 |
gacttattagtgggacttagtgagttttctccacattccacgtttctgttagtggactgagttagt |
19351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 19346 - 19387
Alignment:
| Q |
186 |
gttagtggagtgacttagtttattttctttctttgtaaggct |
227 |
Q |
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| T |
19346 |
gttagtggagtaacttaatttattttctttctttgtaaggct |
19387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 37254006 - 37254071
Alignment:
| Q |
139 |
gacttattactgggacttggttagttttctccacattccacgtttgtgttagtggagtgacttagt |
204 |
Q |
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| T |
37254006 |
gacttattagtgggacttagtgagttttctccacattccacgtttctgttagtggactgagttagt |
37254071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 37254066 - 37254107
Alignment:
| Q |
186 |
gttagtggagtgacttagtttattttctttctttgtaaggct |
227 |
Q |
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| T |
37254066 |
gttagtggagtaacttaatttattttctttctttgtaaggct |
37254107 |
T |
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