View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7744_low_15 (Length: 228)

Name: NF7744_low_15
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7744_low_15
NF7744_low_15
[»] chr2 (23 HSPs)
chr2 (9-220)||(16952081-16952292)
chr2 (9-220)||(17022746-17022957)
chr2 (39-220)||(17060082-17060263)
chr2 (82-219)||(12342992-12343127)
chr2 (101-220)||(10173370-10173487)
chr2 (151-217)||(14106361-14106427)
chr2 (13-82)||(20572344-20572413)
chr2 (151-217)||(7460852-7460918)
chr2 (26-122)||(25504640-25504738)
chr2 (53-122)||(22884895-22884963)
chr2 (50-200)||(27740152-27740298)
chr2 (90-217)||(387351-387476)
chr2 (135-212)||(20572253-20572329)
chr2 (71-220)||(7696133-7696283)
chr2 (157-217)||(39338710-39338769)
chr2 (50-107)||(13699042-13699100)
chr2 (9-107)||(24308447-24308550)
chr2 (73-213)||(27879913-27880054)
chr2 (151-217)||(7874467-7874532)
chr2 (13-110)||(12257280-12257378)
chr2 (53-122)||(33788391-33788461)
chr2 (161-217)||(14405374-14405431)
chr2 (157-205)||(10524289-10524336)
[»] chr1 (18 HSPs)
chr1 (9-175)||(41126188-41126353)
chr1 (13-200)||(38544457-38544642)
chr1 (9-201)||(16577451-16577628)
chr1 (82-201)||(38548848-38548964)
chr1 (71-190)||(32882568-32882688)
chr1 (151-206)||(24659115-24659170)
chr1 (151-217)||(7857829-7857895)
chr1 (26-122)||(17033839-17033936)
chr1 (82-208)||(11439790-11439919)
chr1 (16-110)||(26602553-26602648)
chr1 (17-122)||(42374415-42374521)
chr1 (56-107)||(37200386-37200438)
chr1 (157-205)||(46814312-46814360)
chr1 (83-181)||(16148987-16149083)
chr1 (57-105)||(17993868-17993917)
chr1 (158-215)||(27031687-27031743)
chr1 (183-220)||(41126348-41126385)
chr1 (157-217)||(46692664-46692723)
[»] chr7 (19 HSPs)
chr7 (9-212)||(23983386-23983588)
chr7 (23-122)||(28534240-28534340)
chr7 (141-220)||(3478523-3478601)
chr7 (26-122)||(22567844-22567941)
chr7 (59-220)||(24324545-24324707)
chr7 (151-206)||(34390149-34390204)
chr7 (151-217)||(6585058-6585124)
chr7 (82-176)||(1321011-1321105)
chr7 (150-220)||(6716575-6716646)
chr7 (83-185)||(36449284-36449383)
chr7 (159-220)||(8745324-8745388)
chr7 (17-117)||(31409706-31409807)
chr7 (136-220)||(9107318-9107401)
chr7 (157-217)||(31971979-31972038)
chr7 (152-200)||(35745662-35745710)
chr7 (157-217)||(47325730-47325789)
chr7 (157-187)||(3867322-3867352)
chr7 (59-175)||(33719183-33719300)
chr7 (141-217)||(38306438-38306513)
[»] chr6 (4 HSPs)
chr6 (13-220)||(32935043-32935249)
chr6 (50-122)||(17278240-17278313)
chr6 (15-200)||(33968340-33968519)
chr6 (82-122)||(16180687-16180727)
[»] scaffold1613 (1 HSPs)
scaffold1613 (13-200)||(736-921)
[»] chr5 (13 HSPs)
chr5 (59-220)||(21398067-21398229)
chr5 (26-122)||(8731169-8731267)
chr5 (32-200)||(17853792-17853958)
chr5 (59-220)||(14302191-14302355)
chr5 (90-216)||(7161795-7161919)
chr5 (50-110)||(39183942-39184003)
chr5 (157-220)||(13954094-13954158)
chr5 (59-126)||(30097598-30097666)
chr5 (153-220)||(39024285-39024352)
chr5 (159-216)||(7391845-7391902)
chr5 (141-187)||(18313472-18313518)
chr5 (9-66)||(24071998-24072055)
chr5 (157-217)||(18593420-18593479)
[»] chr4 (11 HSPs)
chr4 (159-220)||(19673271-19673332)
chr4 (71-220)||(16832779-16832931)
chr4 (161-220)||(19815071-19815130)
chr4 (151-222)||(35341179-35341249)
chr4 (135-217)||(12296335-12296417)
chr4 (157-217)||(31050506-31050566)
chr4 (71-176)||(38636993-38637096)
chr4 (141-207)||(30964624-30964689)
chr4 (74-220)||(48098504-48098651)
chr4 (156-220)||(25753343-25753410)
chr4 (157-205)||(2825971-2826018)
[»] chr8 (12 HSPs)
chr8 (59-181)||(17656483-17656606)
chr8 (13-104)||(25184861-25184953)
chr8 (21-122)||(15906939-15907041)
chr8 (9-217)||(1760784-1760992)
chr8 (135-200)||(17720545-17720610)
chr8 (151-215)||(15821218-15821282)
chr8 (83-182)||(12197847-12197945)
chr8 (83-182)||(12442275-12442373)
chr8 (151-190)||(35816085-35816124)
chr8 (157-205)||(31207207-31207254)
chr8 (150-206)||(37986696-37986751)
chr8 (157-217)||(41893247-41893306)
[»] chr3 (17 HSPs)
chr3 (151-217)||(23328189-23328255)
chr3 (14-119)||(27399217-27399323)
chr3 (9-86)||(45354645-45354722)
chr3 (155-220)||(39021120-39021186)
chr3 (52-196)||(25594289-25594431)
chr3 (16-107)||(823141-823233)
chr3 (59-209)||(37123562-37123715)
chr3 (82-124)||(32010029-32010071)
chr3 (93-209)||(7105025-7105140)
chr3 (130-221)||(14879606-14879700)
chr3 (50-97)||(16266009-16266057)
chr3 (73-124)||(46358167-46358220)
chr3 (82-179)||(12086455-12086551)
chr3 (157-206)||(40023417-40023466)
chr3 (163-211)||(27399128-27399176)
chr3 (157-205)||(45398984-45399032)
chr3 (157-217)||(47235875-47235934)
[»] scaffold0050 (1 HSPs)
scaffold0050 (59-182)||(36920-37040)
[»] scaffold1384 (1 HSPs)
scaffold1384 (83-179)||(1428-1523)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 16952081 - 16952292
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16952081 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 16952180  T
Q  109 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16952181 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtc 16952280  T
Q  209 ctcaacaccaaa 220  Q
    ||||||||||||    
T  16952281 ctcaacaccaaa 16952292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 17022746 - 17022957
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022746 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 17022845  T
Q  109 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022846 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtc 17022945  T
Q  209 ctcaacaccaaa 220  Q
    ||||||||||||    
T  17022946 ctcaacaccaaa 17022957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 17060082 - 17060263
Alignment:
Q  39 cctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17060082 cctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaa 17060181  T
Q  139 aagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17060182 aagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 17060263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 12343127 - 12342992
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 181  Q
    ||||||| || ||||||| |||||||||| ||||||||||||| | || ||| ||||| ||||| ||  |||||||||||||||||||||||||| ||||    
T  12343127 caaaatacacgtcaccacctaaaacagactccttcacgaaaacgacct-ctgtaaaaacgatatcca--accactcatcgtcactactcaccccccaaga 12343031  T
Q  182 a-cacccctctaaatgaaactcccagtcctcaacaccaa 219  Q
    | |||||||| |||  |||||||||||||||||||||||    
T  12343030 aacacccctcaaaaataaactcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 10173370 - 10173487
Alignment:
Q  101 taaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    ||||||||||| ||||| |||||| | |||||| ||||| ||||| || |||||||||||||||||||||| |||||||||| || |||| |||| ||||    
T  10173370 taaaacagacgtcttcatgaaaacga-ctactgtaaaaacgatatacaacaccactcatcgtcactactca-ccccaaagaatactcctcaaaattaaac 10173467  T
Q  201 tcccagtcctcaacaccaaa 220  Q
    || |||||||||||||||||    
T  10173468 tctcagtcctcaacaccaaa 10173487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 14106361 - 14106427
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||    
T  14106361 accactcatcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacc 14106427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20572413 - 20572344
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac 82  Q
    |||||||||||| |||||||||||||| || ||||  |||||||||||||||||||| ||||||||||||    
T  20572413 cataaaagacacccctacacacaacacttactcataccctaccttcaacacccatgaggacaacacccac 20572344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 7460918 - 7460852
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||| | ||||||||    
T  7460918 accacacatcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacc 7460852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 25504640 - 25504738
Alignment:
Q  26 cctacacacaacacctagtcattgcctaccttcaacacccatgacgac-aacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||||||   || ||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||||||||  | |||||||||    
T  25504640 cctacacacaacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaa 25504738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 22884895 - 22884963
Alignment:
Q  53 accttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    ||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| |||||||||||    
T  22884895 accttcaacacccatgtggacaacacccactaaa-aaacatcaccacctaaaacagactccttcacgaaa 22884963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 27740298 - 27740152
Alignment:
Q  50 cctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattca 148  Q
    |||||||||||||||||||| |||||| |||| ||||||||||  |||||| ||| ||| || |||||||||||  |  | |||| || || ||||||||    
T  27740298 cctaccttcaacacccatgaggacaacgcccatcaaaataaac--caccacctaatacaaactccttcacgaaacta--ccactg-aagaacgatattca 27740204  T
Q  149 tcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    | ||||||| ||| ||||||||| |||  || ||||||||||||||||||||    
T  27740203 taaccactcgtcgccactactcatcccagaataacacccctctaaatgaaac 27740152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 387476 - 387351
Alignment:
Q  90 acatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccct 189  Q
    |||||||||| |||||||||| ||||||| ||||||| | | || ||| |  | ||||| |||| | ||||||||||| |||||||||||||||| ||||    
T  387476 acatcaccacctaaaacagactccttcacaaaaacaagc-attgtaaacacaaaattcaccaccgcccatcgtcactattcacccccaaagaaca-ccct 387379  T
Q  190 ctaaatgaaactcccagtcctcaacacc 217  Q
    | |||| |||||||||| || |||||||    
T  387378 caaaataaaactcccagaccccaacacc 387351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 20572329 - 20572253
Alignment:
Q  135 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctca 212  Q
    ||||| ||||| ||| ||||| ||||| ||||||||||| | |||||||||||||||||||||||||| || ||||||    
T  20572329 aaaaacgatatccataaccac-catcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctca 20572253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 7696283 - 7696133
Alignment:
Q  71 gacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactact 169  Q
    |||||||||||| |||||| |||||||||| ||||| | || |||||||||||||  || | || ||||| ||||||||  |||||||||||||||||||    
T  7696283 gacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaac-gaccaatgtaaaaatgatattca--accactcatcgtcactact 7696187  T
Q  170 caccccc---aaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||| |||    || |||||||||  |||| |||||||  ||||| |||||||||    
T  7696186 cactcccttagaaaaacacccctaaaaataaaactcctggtcctgaacaccaaa 7696133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 39338710 - 39338769
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||    
T  39338710 catcgtcactactcacccacaaagaaca-ccctcaaaataaaactcccagacctcaacacc 39338769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 13699042 - 13699100
Alignment:
Q  50 cctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaaca 107  Q
    |||||||||||||||| ||| || ||||||||| ||||||||||||||||| |||||||    
T  13699042 cctaccttcaacacccctgaagataacacccaccaaaataaacatcaccacctaaaaca 13699100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 24308447 - 24308550
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacaccc-----atgacgacaacaccca-caaaataaacatcaccactta 102  Q
    |||||||||||||||| |||||||| || |||||||||   ||||| |||||||| |     |||||||||||||||| |||||||||||||| ||| ||    
T  24308447 acatcataaaagacac-cctacacagaatacctagtcaaaccctactttcaacactcatctgatgacgacaacacccaccaaaataaacatcatcaccta 24308545  T
Q  103 aaaca 107  Q
    |||||    
T  24308546 aaaca 24308550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 27879913 - 27880054
Alignment:
Q  73 caacacccac--aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactc 170  Q
    ||||||||||  ||||||||||||||||| |||||||||| |||||| |||||| | || ||| ||||| || || ||| ||||||||||  ||||||||    
T  27879913 caacacccaccaaaaataaacatcaccacctaaaacagactccttcaggaaaacgacct-ctg-aaaaacgaaatccataaccactcatcaccactactc 27880010  T
Q  171 -acccccaaagaacacccctctaaatgaaactcccagtcctcaa 213  Q
     | | | | | || ||||||||||||||||| ||| ||||||||    
T  27880011 aaacgctatataaaacccctctaaatgaaacaccccgtcctcaa 27880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 7874532 - 7874467
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| ||||||||||||||||||| |||||||| ||||| |||| ||||||| || | ||||||||    
T  7874532 accacccatcgtcactactcacccc-aaagaacatccctcaaaataaaactccaagacttcaacacc 7874467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 12257280 - 12257378
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 110  Q
    ||||||| ||||  ||||||||||||||||  ||   ||||||  |||||| ||||  ||||||||| | |||||||||||||||||||||||| ||||    
T  12257280 cataaaaaacacatctacacacaacacctaaccacgccctaccaacaacactcatgctgacaacacctatcaaaataaacatcaccacttaaaagagac 12257378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 33788391 - 33788461
Alignment:
Q  53 accttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||  ||||||||||| |||||||||||  |||| |||||||| | ||| |||||||    
T  33788391 accttcaacacccatgagtacaacacccactaaaataaacattgccacctaaaacaggctcctccacgaaa 33788461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 14405431 - 14405374
Alignment:
Q  161 gtcactactcaccccc-aaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||| |||||||| ||||| |||| |||||||||| | ||||||||    
T  14405431 gtcactactcacccccaaaagaacatccctcaaaataaaactcccagacttcaacacc 14405374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 10524336 - 10524289
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactccca 205  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||||||    
T  10524336 catcgtcactactcacccacaaagaaca-ccctccaaataaaactccca 10524289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 41126188 - 41126353
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 108  Q
    |||| ||||||||||| |||||||||||||| ||| |||  ||||||||||||||||| || ||||||||| |||||||| | |||||||| ||||||||    
T  41126188 acattataaaagacacccctacacacaacacatagccataccctaccttcaacacccaagaggacaacacctacaaaatacatatcaccacctaaaacag 41126287  T
Q  109 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccc 175  Q
    |||| ||||||||||||||| ||||  |||| ||||| ||||||||| |||||||||||||||||||    
T  41126288 acgcattcacgaaaacaaaccactg-taaaacgatatccatcaccacccatcgtcactactcacccc 41126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 38544457 - 38544642
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacg 111  Q
    |||||||||||  |||||||||||||||||| ||   | |||||||||||||||||| |||||||  ||| ||||||||||||||||| ||||||||||     
T  38544457 cataaaagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagact 38544556  T
Q  112 ccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    | |||||| ||    |  ||||  |||| ||||| ||| ||||||||||||||||||||| ||| |   ||||||||||||||||||||    
T  38544557 ctttcacggaa--tgatcactg-gaaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctctaaatgaaac 38544642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 16577628 - 16577451
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaataaacatcaccacttaaaacag 108  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||| |||||||||||               |||||||||||||| ||| ||||||||    
T  16577628 acatcataaaagacacccctacacacaacatctagtcataccctactttcaacaccca--------------ccaaaataaacatcatcacctaaaacag 16577543  T
Q  109 acgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaact 201  Q
    || | |||||||||||  || |||  ||||| ||||| ||| |||| |||||||| |||||||| || |||||||||||||||||| ||||||    
T  16577542 actctttcacgaaaac-gaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctctaaaagaaact 16577451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 38548848 - 38548964
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 181  Q
    |||||||||||||||||| |||||||||| | ||||||||| | | | |||| ||||| ||||||||| ||||| ||||||||||||||| ||| ||  |    
T  38548848 caaaataaacatcaccacctaaaacagactctttcacgaaa-cgatc-actg-aaaaacgatattcataaccacccatcgtcactactcatcccaaagta 38548944  T
Q  182 acacccctctaaatgaaact 201  Q
    |||||||||||||| |||||    
T  38548945 acacccctctaaatcaaact 38548964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 32882688 - 32882568
Alignment:
Q  71 gacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactact 169  Q
    |||||||||||| |||||| |||||||| | |||||| ||| ||||||||||||| | | |||| ||| | ||||| || |||||| |||||||||||||    
T  32882688 gacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagc-actgtaaacacgatatccaacaccacccatcgtcactact 32882590  T
Q  170 cac-ccccaaagaacacccctc 190  Q
    ||| |||||| |||||||||||    
T  32882589 caccccccaacgaacacccctc 32882568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 24659170 - 24659115
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccag 206  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  24659170 accacccatcgtcactactcacccccaaataacacccctcaaaataaaactcccag 24659115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 7857895 - 7857829
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| ||||| ||||||||||||||| |||||||||||| |||| |||||||||| | ||||||||    
T  7857895 accacccatcgccactactcacccccatagaacacccctcaaaataaaactcccagacttcaacacc 7857829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 17033936 - 17033839
Alignment:
Q  26 cctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    ||||||||||||| |||||||   |||||||||||||||| ||  ||||||| |||| ||||||||||| ||||| ||||||| || | |||||||||    
T  17033936 cctacacacaacaactagtcaaaccctaccttcaacacccctggggacaacatccacgaaaataaacattaccacctaaaacatactctttcacgaaa 17033839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 11439790 - 11439919
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactact-cacccccaaag 180  Q
    ||||||| || ||||||| |||||||||  ||||||||||| | ||| || | ||||| ||||| || ||||||| |||||||||||| |||||||||||    
T  11439790 caaaatacacgtcaccacctaaaacagatcccttcacgaaagc-aaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaag 11439888  T
Q  181 ---aacacccctctaaatgaaactcccagtc 208  Q
       ||||||||||  ||| ||||||||||||    
T  11439889 aaaaacacccctcagaattaaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26602553 - 26602648
Alignment:
Q  16 aaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagac 110  Q
    |||| |||| |||||||||||||||||| ||   ||||||||||||| ||  || |||||||||||  ||||||||||||||||| ||| ||||||    
T  26602553 aaaatacacccctacacacaacacctagccaaaccctaccttcaacaaccccgaggacaacacccatgaaaataaacatcaccacctaacacagac 26602648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 42374521 - 42374415
Alignment:
Q  17 aaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgcctt 115  Q
    |||||||||| |||||||| |||||| |||  || || ||||||||||| ||  |||||| |||| ||| |||||||||||||| ||||||| |  ||||    
T  42374521 aaagacactcgtacacacagcacctaatcaaagcataacttcaacacccttggggacaacccccaccaagataaacatcaccacctaaaacaaattcctt 42374422  T
Q  116 cacgaaa 122  Q
    |||||||    
T  42374421 cacgaaa 42374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 37200438 - 37200386
Alignment:
Q  56 ttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaaca 107  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||| |||||||    
T  37200438 ttcaacactcatgaggacaacacccactaaaataaacatcaccacctaaaaca 37200386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 46814312 - 46814360
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactccca 205  Q
    ||||||||||||||||| ||||| |||||||||| |||| |||||||||    
T  46814312 catcgtcactactcacctccaaataacacccctcgaaataaaactccca 46814360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 16149083 - 16148987
Alignment:
Q  83 aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 181  Q
    |||||| || ||||||| |||||||||| |||||| | |||| | |||||| ||||| ||||| ||  | ||| |||||||||||||||||||||||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacga-ctactg-aaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 17993868 - 17993917
Alignment:
Q  57 tcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaa 105  Q
    ||||||||||| | |||||||||||| ||||||||||||||| |||||||    
T  17993868 tcaacacccataaggacaacacccaccaaaataaacatcaccccttaaaa 17993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 27031687 - 27031743
Alignment:
Q  158 atcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaaca 215  Q
    |||||||||||||||||| | |||||||||||| |||| |||||||||| | ||||||    
T  27031687 atcgtcactactcacccc-agagaacacccctcaaaataaaactcccagacttcaaca 27031743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 41126348 - 41126385
Alignment:
Q  183 cacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  41126348 cacccctctaaatgaaactctcagtcctcatcaccaaa 41126385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 46692664 - 46692723
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||| |||| ||||| |||| || |||||||    
T  46692664 catcgtcactactcacccacaaagaaca-ccctccaaataaaacttccagaccccaacacc 46692723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 23983588 - 23983386
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaaca 107  Q
    |||||||||||||||  ||||||||||||||||||||||  | |||||||||||| ||||| ||||||||||| ||||||||||| |||||| |||||||    
T  23983588 acatcataaaagacatccctacacacaacacctagtcataccttaccttcaacacacatgaggacaacacccaccaaaataaacaccaccacctaaaaca 23983489  T
Q  108 gacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagt 207  Q
    ||| | ||||||||||| ||| |||| ||||| ||||| ||| || || |||| |||||||||||||| |||||| ||| |||||||||||| || | ||    
T  23983488 gactcattcacgaaaac-aaccactg-aaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaatgaaattctcggt 23983391  T
Q  208 cctca 212  Q
    |||||    
T  23983390 cctca 23983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 28534240 - 28534340
Alignment:
Q  23 actcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaa 121  Q
    |||||||||||||||| |||| ||   |||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||||||| | ||||||||    
T  28534240 actcctacacacaacaactagccaaaccctaccttcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaa 28534339  T
Q  122 a 122  Q
    |    
T  28534340 a 28534340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 3478601 - 3478523
Alignment:
Q  141 gatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||| ||||||||  | ||||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||    
T  3478601 gatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaaattaaactcccagtcctcaacaccaaa 3478523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 22567844 - 22567941
Alignment:
Q  26 cctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||||||   |||||||||||||||| |   ||||||| ||| ||||||| |||||||||| |||||||||| | |||||||||    
T  22567844 cctacacacaacacctagtcaaaccctaccttcaacacccctagggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacgaaa 22567941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 24324545 - 24324707
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||| ||| |||||||| ||| |||||| || |||||||||||||||||| ||||||||||||   || | || || || ||||| ||  ||||| |    
T  24324545 aacacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatcca--accac-c 24324641  T
Q  158 atcgtcactactcacccccaaag---aacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||||||||||||||| ||||   |||||||||| |||| |||||| | ||||| |||||||||    
T  24324642 atcgtcactactcacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaa 24324707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 34390204 - 34390149
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccag 206  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||    
T  34390204 accacccatcgtcactactcatccccaaagaacacccctcaaaataaaactcccag 34390149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 6585124 - 6585058
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||| |||||||||| | ||||||||    
T  6585124 accactcatcgtcactactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacc 6585058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 1321105 - 1321011
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgcctt-cacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcaccccc 176  Q
    ||||||| |||||||||| |||||||||| |||| ||||||| ||| | |||| ||||| |||||  |  ||||||||||||||||||||||||||    
T  1321105 caaaatacacatcaccacctaaaacagacccctttcacgaaagcaacc-actgtaaaaacgatatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 6716575 - 6716646
Alignment:
Q  150 caccactcatcgtcactactcacccccaaagaa-cacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||| ||| |||||||||||||||||| ||| |||||| | |||| ||||||||| ||||||||||||||    
T  6716575 caccacccattgtcactactcacccccaacgaaacaccccacaaaattaaactcccattcctcaacaccaaa 6716646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 36449383 - 36449284
Alignment:
Q  83 aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaa 182  Q
    ||||||||||||||||| ||||| ||||  ||||||||||   |||  ||| ||||| ||||| ||| ||||||||||||||||||||||| | ||||||    
T  36449383 aaaataaacatcaccacctaaaatagactacttcacgaaac--aaccgctg-aaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 8745388 - 8745324
Alignment:
Q  159 tcgtcactactcacccccaaagaa---cacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||||||||||||||||||   |||||||| |||| |||||||||||| | |||||||||    
T  8745388 tcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaa 8745324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 31409706 - 31409807
Alignment:
Q  17 aaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgcctt 115  Q
    ||||||||  |||| |||||||||||| || | | || ||| |||| |||||| |||||||||| | ||||||||||||| ||| |||||||||| ||||    
T  31409706 aaagacaccactacccacaacacctagccaatccatatctttaacatccatgaggacaacaccctccaaaataaacatcatcacataaaacagactcctt 31409805  T
Q  116 ca 117  Q
    ||    
T  31409806 ca 31409807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 9107401 - 9107318
Alignment:
Q  136 aaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||| ||||| ||| ||||| ||||| ||||||||| ||| ||| ||| |||||||||||||||| |||| |||||| |||||||    
T  9107401 aaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacaccca-tcctcatcaccaaa 9107318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 31971979 - 31972038
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||||||| || |||||||    
T  31971979 catcgtcactactcacccacaaagaaca-ccctccaaataaaactcccagaccccaacacc 31972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 35745662 - 35745710
Alignment:
Q  152 ccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| ||||    
T  35745662 ccacccatcgtcactactcacccccaaagaacacctctcaaaataaaac 35745710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 47325730 - 47325789
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||||||| || |||||||    
T  47325730 catcgtcactactcacccacaaagaaca-ccctcaaaataaaactcccagaccccaacacc 47325789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 3867352 - 3867322
Alignment:
Q  157 catcgtcactactcacccccaaagaacaccc 187  Q
    |||||||||||||||||||||||||||||||    
T  3867352 catcgtcactactcacccccaaagaacaccc 3867322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 33719300 - 33719183
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||| ||||| |||||||||||| ||||||   |||||| | |||||| ||| ||||||| ||||   ||  ||| ||||| ||||| || ||| ||||    
T  33719300 aacactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactc 33719201  T
Q  158 atcgtcactactcacccc 175  Q
    ||||||||||||||||||    
T  33719200 atcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 38306513 - 38306438
Alignment:
Q  141 gatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| || |||||| |||||||||||||||||  ||||||||| ||||| |||| |||||| ||| || |||||||    
T  38306513 gatatccaccaccacccatcgtcactactcacctacaaagaaca-ccctcaaaataaaactcacagaccccaacacc 38306438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 32935043 - 32935249
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcatt-gcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagac 110  Q
    |||||||||||| | |||||||||| || || |||| || |||||||||||| || || |||||||||||| |||||||||| |||||| ||||| ||||    
T  32935043 cataaaagacacccttacacacaacgccgagccattagcttaccttcaacactcacgaggacaacacccaccaaaataaacaccaccacctaaaatagac 32935142  T
Q  111 gccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcct 210  Q
     |||| ||||||||   |  |  |||||| ||||| ||| ||||| |||| |||||||| | ||||||| |||| ||||||||||||||||| |||| ||    
T  32935143 tccttaacgaaaac--gccccctcaaaaacgatatacataaccacccatcatcactactga-ccccaaaaaacatccctctaaatgaaactcacagtgct 32935239  T
Q  211 caacaccaaa 220  Q
    || |||||||    
T  32935240 catcaccaaa 32935249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 17278240 - 17278313
Alignment:
Q  50 cctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||||||||    
T  17278240 cctaccttcaacacccatgcggacaacacccaccaaaataaacattaccacctaaatcagactccttcacgaaa 17278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 33968340 - 33968519
Alignment:
Q  15 taaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgcc 113  Q
    |||||||||| |||||||||| ||||||| ||   |||||||||||||||| ||| ||||||||||| ||||||| ||||||||   |||||||||| |     
T  33968340 taaaagacacccctacacacatcacctagccaaaccctaccttcaacacccttgaggacaacacccaccaaaatagacatcacc---taaaacagactct 33968436  T
Q  114 ttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    || || |||||  || |||| ||||| | ||| ||| ||||  |||| |||||||||| ||| ||| ||||||||||||||||||||    
T  33968437 tttac-aaaac-gaccactg-aaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaac 33968519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 16180687 - 16180727
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  16180687 caaaataaacatcaccacctaaaacagaccccttcaagaaa 16180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 736 - 921
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacg 111  Q
    |||||||||||  |||||||||||||||||| ||   | |||||||||||||||||| |||||||  ||| ||||||||||||||||| ||||||||||     
T  736 cataaaagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagact 835  T
Q  112 ccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    | |||||| ||    |  ||||  |||| ||||| ||| ||||||||||||||||||||| ||| |   ||||||||||||||||||||    
T  836 ctttcacggaa--tgatcactg-gaaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctctaaatgaaac 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 21398067 - 21398229
Alignment:
Q  59 aacacccatgacgacaacacccacaaaa-taaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||| ||| ||||||||  |||||| || || ||||||  |||||||||||||||||||||||||| ||  || ||||| ||||| |  |||||| |    
T  21398067 aacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacct-ttgtaaaaacgatatcccgcaccaccc 21398165  T
Q  158 atcgtcactactcacccccaaag-aacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||| ||| ||||||||||||| | |||| |||||||||  ||||||| ||||||||||||||||    
T  21398166 atcatcagtactcacccccaacgaaacaaccctctaaaataaactcctagtcctcaacaccaaa 21398229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 8731267 - 8731169
Alignment:
Q  26 cctacacacaacacctagtcattgcctaccttcaacacccatgacgac-aacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaa 122  Q
    |||||||||||||||||||||   || ||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||||||||  | |||||||||    
T  8731267 cctacacacaacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaa 8731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 17853792 - 17853958
Alignment:
Q  32 cacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaacta 130  Q
    |||||||||||| ||   |||||||||| ||||||||| || |||||||| ||||||||||||||||   |||||||||| |||| ||| |||| | | |    
T  17853792 cacaacacctagccaaaccctaccttcaccacccatgaggaaaacacccaccaaaataaacatcaccttctaaaacagactcctttacg-aaacgatc-a 17853889  T
Q  131 ctgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    ||| ||||| ||||| ||| ||||| ||||  ||||||||||||| |||| | || ||||||||||||||    
T  17853890 ctg-aaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaac 17853958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 14302191 - 14302355
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||| ||| |||||||||||| |||||| || ||||||| |||||||||  ||||| ||||||| | | | || ||||| ||||| || ||||||      
T  14302191 aacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaa-tgtaaaaacgatatccaacaccacct 14302289  T
Q  158 atcgtcactactcacccccaaag---aacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
     ||||||||||||| ||||||||   || ||||||| |||| ||||||||| |||| |||||||||    
T  14302290 gtcgtcactactcatccccaaagaaaaatacccctcaaaattaaactcccactcctgaacaccaaa 14302355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 7161795 - 7161919
Alignment:
Q  90 acatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccct 189  Q
    ||||||| || |||||||||| ||||||| ||||||| | |||| ||| | ||| | || |||||| || ||||||||||||||||||||||||| || |    
T  7161795 acatcactacctaaaacagactccttcacaaaaacaagc-actgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaaca-ccat 7161892  T
Q  190 ctaaatgaaactcccagtcctcaacac 216  Q
    | |||| |||||||||| || ||||||    
T  7161893 caaaataaaactcccagaccccaacac 7161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 39183942 - 39184003
Alignment:
Q  50 cctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagac 110  Q
    |||||||||||||||| ||| |||||||||||| |||||||| |||||||| ||||||||||    
T  39183942 cctaccttcaacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagac 39184003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 13954094 - 13954158
Alignment:
Q  157 catcgtcactactcacccccaaagaa-cacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||| |||| ||||||| ||| ||||||||||||| |||||||||||||||||| |||||    
T  13954094 catcgtcacaactctcccccaacgaaacacccctctaaattaaactcccagtcctcaacgccaaa 13954158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 30097666 - 30097598
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaa 126  Q
    |||| |||||| |||||||||||| |||||| || ||||||| |||||||||| |||||||||||||||    
T  30097666 aacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 30097598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 39024285 - 39024352
Alignment:
Q  153 cactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||||||||||||||||  ||||||||||| | |||| ||| | ||||||||||| |||||||    
T  39024285 cactcatcgtcactactcaccctaaaagaacacccttgtaaaagaagcacccagtcctcatcaccaaa 39024352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 7391845 - 7391902
Alignment:
Q  159 tcgtcactactcacccccaaag-aacacccctctaaatgaaactcccagtcctcaacac 216  Q
    |||||||||||||||||||||| |||||||||| |||| || |||||| ||||||||||    
T  7391845 tcgtcactactcacccccaaagaaacacccctcaaaat-aatctcccattcctcaacac 7391902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 18313472 - 18313518
Alignment:
Q  141 gatattcatcaccactcatcgtcactactcacccccaaagaacaccc 187  Q
    ||||| ||||||||||||||||||||||||||||   ||||||||||    
T  18313472 gatatccatcaccactcatcgtcactactcacccatgaagaacaccc 18313518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 24071998 - 24072055
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacaccca 66  Q
    ||||||||||||||||  ||||||  ||||||||||||   |||||||||||||||||    
T  24071998 acatcataaaagacacctctacacgtaacacctagtcaaaccctaccttcaacaccca 24072055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 18593479 - 18593420
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| |||||||||  |||| |||| |||||||||| || |||||||    
T  18593479 catcgtcactactcacccacaaagaaca-tcctccaaataaaactcccagaccccaacacc 18593420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 19673332 - 19673271
Alignment:
Q  159 tcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||||||||||||||||||||| |||| |||| |||||| |||||||||||||||||    
T  19673332 tcgtcactactcacccccaaagaacactcctcaaaattaaactctcagtcctcaacaccaaa 19673271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 16832779 - 16832931
Alignment:
Q  71 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactc 170  Q
    |||||||||||| |||||||| ||||||| ||||||| |  ||| ||||||||   ||  ||| ||||||||||| || |||||| | ||||||||||||    
T  16832779 gacaacacccaccaaataaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactc 16832878  T
Q  171 acccc---caaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||    ||| |||||||||| |||| |||||| ||||| | |||||||||    
T  16832879 accccaaagaaaaaacacccctcaaaattaaactcacagtcttgaacaccaaa 16832931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 19815071 - 19815130
Alignment:
Q  161 gtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||||||||||||||||||||||  ||| | || |||||| |||||||||||||||||    
T  19815071 gtcactactcacccccaaagaacacttctcaagattaaactctcagtcctcaacaccaaa 19815130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 35341179 - 35341249
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaact 222  Q
    ||||| ||||||||||||||||||| | |||||||||||| |||| |||||||||  | |||||||||||||    
T  35341179 accacccatcgtcactactcacccc-agagaacacccctcaaaataaaactcccaaacttcaacaccaaact 35341249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 12296417 - 12296335
Alignment:
Q  135 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| ||||| ||| ||||| ||||| ||||||||| ||| ||| |||||||||||||||||||| | | ||||||| ||||    
T  12296417 aaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacc 12296335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 31050506 - 31050566
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||  |||| | ||||||||    
T  31050506 catcgtcactactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacc 31050566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 38636993 - 38637096
Alignment:
Q  71 gacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactact 169  Q
    |||||||||||| |||||| |  ||||||| ||||||| || ||||||||||||| |||  ||| ||||| ||||| ||  ||||| |||||||||||||    
T  38636993 gacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaac-aaccgctgtaaaaatgatatcca--accacccatcgtcactact 38637089  T
Q  170 caccccc 176  Q
    |||||||    
T  38637090 caccccc 38637096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 30964689 - 30964624
Alignment:
Q  141 gatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagt 207  Q
    |||||||| |||| | |||| ||||||||||||| ||||||||| ||||| |||| |||||||||||    
T  30964689 gatattcaccaccgcccatcatcactactcacccacaaagaaca-ccctcaaaataaaactcccagt 30964624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 48098651 - 48098504
Alignment:
Q  74 aacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacc 173  Q
    ||||||||| ||||| || ||||||| |||||||  | | ||||| ||||| | | |||| ||||| ||||| |||||| || | |||||||||||||||    
T  48098651 aacacccaccaaatacacgtcaccacctaaaaca--ctctttcacaaaaacgacc-actgtaaaaacgatatccatcacaacccgtcgtcactactcacc 48098555  T
Q  174 cccaaaga----acacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    ||||||||    ||||||||  |||  |||||||||||| | |||||||||    
T  48098554 cccaaagaaaatacacccctaaaaaataaactcccagtcttaaacaccaaa 48098504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 25753410 - 25753343
Alignment:
Q  156 tcatcgtcactactcacccccaaag---aacacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||||||||||||||||||||||   |||||||||| |||| |||||  ||||||| |||| ||||    
T  25753410 tcatcgtcactactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaa 25753343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 2826018 - 2825971
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactccca 205  Q
    ||||||||||||||||||| | |||||||||||| |||| |||||||||    
T  2826018 catcgtcactactcacccc-agagaacacccctcaaaataaaactccca 2825971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 17656483 - 17656606
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||| ||| |||||||||||| |||||  || ||||||  |||||||||| |||||| |||||   || |||||||||| ||||| || |||| |||    
T  17656483 aacacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctc 17656582  T
Q  158 atcgtcactactcacccccaaaga 181  Q
    || |||||||||||||||||||||    
T  17656583 attgtcactactcacccccaaaga 17656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 25184861 - 25184953
Alignment:
Q  13 cataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaa 104  Q
    |||||||||||  | ||||||||| |||||| ||   |||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  25184861 cataaaagacatccatacacacaatacctagccaagccctaccttcaacactcatgaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 15907041 - 15906939
Alignment:
Q  21 acactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccaca-aaataaacatcaccacttaaaacagacgccttcacg 119  Q
    |||| |||||||||||||||||| |    |||||||||||||||||||| ||| ||||||||| | ||| ||||||||||  ||||||||  ||||||||    
T  15907041 acacccctacacacaacacctagcccaaccctaccttcaacacccatgaggaccacacccacagagatagacatcaccaccaaaaacagatcccttcacg 15906942  T
Q  120 aaa 122  Q
    |||    
T  15906941 aaa 15906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 1760992 - 1760784
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccc--acaaaataaacatcaccacttaaaac 106  Q
    ||||||||||||||| || ||| ||||||||||| |||   ||| |||||||||| ||||  ||||||||||   |||||||||  | ||||| ||||||    
T  1760992 acatcataaaagacattcatacgcacaacacctaatcaaaccctgccttcaacactcatgcggacaacaccccatcaaaataaatttgaccacctaaaac 1760893  T
Q  107 agacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccag 206  Q
    |||| ||  |||||||   |||  ||| ||||| |||||  || |||| ||||||||||||||||| |  ||| |||||||||||| || |||| ||| |    
T  1760892 agactccaccacgaaa--caaccgctgaaaaaatgatatctataaccattcatcgtcactactcactctaaaataacacccctctacatcaaacaccctg 1760795  T
Q  207 tcctcaacacc 217  Q
    | |||| ||||    
T  1760794 tactcatcacc 1760784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 17720545 - 17720610
Alignment:
Q  135 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 200  Q
    ||||||||||| ||| |||||  |||||||||||||||||| |||  | |||||||||||||||||    
T  17720545 aaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctctaaatgaaac 17720610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 15821218 - 15821282
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaaca 215  Q
    ||||||||||| |||||||||| || ||||||||| |||| |||| |||||||||| | ||||||    
T  15821218 accactcatcgccactactcactccaaaagaacactcctcaaaataaaactcccagacttcaaca 15821282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 12197847 - 12197945
Alignment:
Q  83 aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaa 182  Q
    |||||| || ||||||| || |||||||||||||| ||| || | | |||  ||||| ||||| || |||||| | ||||||||||||||||||||||||    
T  12197847 aaaatacacgtcaccacctacaacagacgccttcatgaacacgacc-actaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 12442275 - 12442373
Alignment:
Q  83 aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaa 182  Q
    |||||| || ||||||| || |||||||||||||| ||| || | | |||  ||||| ||||| || |||||| | ||||||||||||||||||||||||    
T  12442275 aaaatacacgtcaccacctacaacagacgccttcatgaacacgacc-actaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 35816085 - 35816124
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctc 190  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  35816085 accacccatcatcactactcacccccaaagaacacccctc 35816124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 31207207 - 31207254
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactccca 205  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||||||    
T  31207207 catcgtcactactcacccacaaagaaca-ccctcaaaataaaactccca 31207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 37986696 - 37986751
Alignment:
Q  150 caccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccag 206  Q
    |||||| |||||||| ||||||||| ||||||||| ||||| |||| ||||||||||    
T  37986696 caccacccatcgtcattactcacccacaaagaaca-ccctccaaataaaactcccag 37986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 41893247 - 41893306
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||  ||||  ||||||||| ||||||||||    
T  41893247 catcgtcactactcacccacaaagaaca-ccctgaaaatagaactcccagacctcaacacc 41893306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 23328189 - 23328255
Alignment:
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||| | ||||||||    
T  23328189 accacccatcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacc 23328255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 27399323 - 27399217
Alignment:
Q  14 ataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgc 112  Q
    ||||||||||| | |||||||||||| ||| ||    | ||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||| | |    
T  27399323 ataaaagacacacttacacacaacacttagccaagctcgaccttcaacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacaggctc 27399224  T
Q  113 cttcacg 119  Q
    |||||||    
T  27399223 cttcacg 27399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 45354645 - 45354722
Alignment:
Q  9 acatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccacaaaa 86  Q
    |||||||||||||||| |||||||||| ||||||| ||   ||||||||||||||| || | ||||||||||||||||    
T  45354645 acatcataaaagacacccctacacacagcacctagccaaaccctaccttcaacacctattaggacaacacccacaaaa 45354722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 39021120 - 39021186
Alignment:
Q  155 ctcatcgtcactactcacccccaaagaa-cacccctctaaatgaaactcccagtcctcaacaccaaa 220  Q
    |||||||||||||||||| ||||||||| ||| | || ||||||||||| |||||||||||||||||    
T  39021120 ctcatcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaa 39021186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 25594289 - 25594431
Alignment:
Q  52 taccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatc 150  Q
    |||||||||||||||||| ||||||||||| || |||||||||||| || ||||||| || ||||||| |||||  || |||| ||||| ||||| ||      
T  25594289 taccttcaacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaac-gaccactgaaaaaacgatatcca-a 25594385  T
Q  151 accactcatcgtcactactcacccccaaagaacacccctctaaatg 196  Q
    ||||| ||||| ||||||||| ||| | | ||||| ||||||||||    
T  25594386 accacccatcgccactactcatcccaagataacactcctctaaatg 25594431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 823141 - 823233
Alignment:
Q  16 aaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacaccca-caaaataaacatcaccacttaaaaca 107  Q
    ||||||||| | |||||||||| |||| |||   |||||||||||||||||||| |||| |||||| |||||| ||| ||||||| |||||||    
T  823141 aaaagacacccttacacacaacccctaatcaacccctaccttcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaaca 823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 37123715 - 37123562
Alignment:
Q  59 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||| ||| |||||||||||| |||||| |||||||||  ||||| ||||  ||||||||||||  || |||| ||||| ||||| || ||||||      
T  37123715 aacacccttgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaac-gaccactgtaaaaacgatatccaacaccacct 37123617  T
Q  158 atcgtcactactcacccccaaa---gaacacccctctaaatgaaactcccagtcc 209  Q
     | ||||||||||||| |||||   ||||||||||| |||| |||||| ||||||    
T  37123616 gttgtcactactcaccgccaaagatgaacacccctccaaattaaactctcagtcc 37123562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 32010071 - 32010029
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaaac 124  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  32010071 caaaataaacatcaccacctaaaacagactccttcacgaaaac 32010029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 7105140 - 7105025
Alignment:
Q  93 tcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctcta 192  Q
    ||||||| ||||||||||  ||||| |||||||| | |||  |||||   ||| || |||||| ||||||||||||||||||| ||  |||||||||  |    
T  7105140 tcaccacctaaaacagacttcttcaagaaaacaagc-actataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaacaccccttaa 7105042  T
Q  193 aatgaaactcccagtcc 209  Q
    ||| |||||||||||||    
T  7105041 aataaaactcccagtcc 7105025  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 14879700 - 14879606
Alignment:
Q  130 actgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaag---aacacccctctaaatgaaactcccagtcctcaacaccaaac 221  Q
    |||| ||||| ||||| || |||||| ||||||||||| ||||||| ||||   |||||||||| |||| |||||||||| | | ||||||||||    
T  14879700 actgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactcccagacttgaacaccaaac 14879606  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 16266057 - 16266009
Alignment:
Q  50 cctaccttcaacacccatgacgacaacaccca-caaaataaacatcacc 97  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  16266057 cctaccttcaacacccatgaggacaacatccaccaaaataaacatcacc 16266009  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 46358167 - 46358220
Alignment:
Q  73 caacacccacaaa--ataaacatcaccacttaaaacagacgccttcacgaaaac 124  Q
    |||||||||||||  |||||||||| ||| |||||||||| |||||||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaac 46358220  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 12086551 - 12086455
Alignment:
Q  82 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaa 179  Q
    |||||||||||||||||| ||||||||| |  |||| |||||| | | |||| ||||| |||||||| ||| ||  ||||||| |||||| |||||||    
T  12086551 caaaataaacatcaccacctaaaacagatgtattcaagaaaacgatc-actgtaaaaacgatattcaacacgacatatcgtcagtactcatccccaaa 12086455  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 40023417 - 40023466
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccag 206  Q
    ||||||||||||||| ||| ||||||| |||||| |||| ||||||||||    
T  40023417 catcgtcactactcatcccaaaagaacgcccctcaaaataaaactcccag 40023466  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 27399176 - 27399128
Alignment:
Q  163 cactactcacccccaaagaacacccctctaaatgaaactcccagtcctc 211  Q
    ||||||||| ||| ||||||||||| |||||||||||| || |||||||    
T  27399176 cactactcagcccaaaagaacacccgtctaaatgaaacaccaagtcctc 27399128  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 45399032 - 45398984
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactccca 205  Q
    |||||||||||||||||||||| ||||||||| | ||||  ||||||||    
T  45399032 catcgtcactactcacccccaacgaacaccccacaaaatagaactccca 45398984  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 47235934 - 47235875
Alignment:
Q  157 catcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacacc 217  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||| ||| || |||||||    
T  47235934 catcgtcactactcacccacaaagaaca-ccctcaaaataaaactcgcagaccccaacacc 47235875  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 37040 - 36920
Alignment:
Q  59 aacacccatgacgacaacaccca-caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactc 157  Q
    ||||||||||| ||| ||||||| ||||||| || ||||||| |||||||||| ||||||||||| |  || |||| ||||| || || ||  ||||  |    
T  37040 aacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacgaaacc--accactgtaaaaacgacatcca--accatcc 36945  T
Q  158 atcgtcactactcacccccaaagaa 182  Q
    | |||||||||||||||||||||||    
T  36944 accgtcactactcacccccaaagaa 36920  T

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Target: scaffold1384 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 1428 - 1523
Alignment:
Q  83 aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaa 179  Q
    |||||| || ||||||| |||||| ||| ||| ||||| ||||| | |||| ||||| ||||| || |||||| | ||||||||||| |||||||||    
T  1428 aaaatacacgtcaccacctaaaactgactcctacacgagaacaacc-actgtaaaaacgatatccaacaccacacgtcgtcactactgacccccaaa 1523  T

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