View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7744_low_5 (Length: 432)
Name: NF7744_low_5
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7744_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 24877714 - 24877308
Alignment:
| Q |
18 |
ttaattacttctatttttcatggcttttccagattttttatagctgccaataaaatcgaatattgaatataggaacaaatgatcacaaggatgaaaaatt |
117 |
Q |
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| T |
24877714 |
ttaattacttctttttttcatggcttttccagattttttatagctgccaataaaatcgaatattgaatataggaacaaatgatcaaaaggatgaaaaatt |
24877615 |
T |
|
| Q |
118 |
gttaaaaaatgagattcggacagagtttttcagatgcagtaaaaatgataattaataataatagggaatcttcttgacaatttcatatgtaccaacaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
24877614 |
gttaaaaaatgagattcggacagagtttttcagatgcagtaaaaatgataatttataataatacggaatcttcttgacaatttcatacgtaccaacaatt |
24877515 |
T |
|
| Q |
218 |
gtttataagtaaaaatattaagcttatcaaaatattggtatgtaatcactcataataatattgaatattagaaactaataataatattcgatttttaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877514 |
gtttataagtaaaaatattaagcttatcaaaatattggtatgtaatcactcataataatattgaatattagaaactaataataatattcgatttttaata |
24877415 |
T |
|
| Q |
318 |
cgtaccaataattgtttctggggcttgagtatttcctctgcgctgaaactcgttgtgtgtttctaaccgtcttctggttcttctactgttagtatgatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877414 |
cgtaccaataattgtttctggggcttgagtatttcctctgcgctgaaactcgttgtgtgtttctaaccgtcttctggttcttctactgttagtatgatgt |
24877315 |
T |
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| Q |
418 |
tcatctc |
424 |
Q |
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||||||| |
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| T |
24877314 |
tcatctc |
24877308 |
T |
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