View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7744_low_7 (Length: 314)

Name: NF7744_low_7
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7744_low_7
NF7744_low_7
[»] chr5 (6 HSPs)
chr5 (24-314)||(37704626-37704916)
chr5 (122-310)||(37699152-37699349)
chr5 (182-310)||(37437696-37437823)
chr5 (238-296)||(37698806-37698864)
chr5 (27-63)||(1630012-1630048)
chr5 (24-64)||(30384256-30384296)
[»] chr4 (2 HSPs)
chr4 (122-310)||(16840857-16841060)
chr4 (24-62)||(31095092-31095130)
[»] chr6 (2 HSPs)
chr6 (24-62)||(17411089-17411127)
chr6 (33-63)||(196257-196287)
[»] chr8 (1 HSPs)
chr8 (24-62)||(18080600-18080638)
[»] chr7 (1 HSPs)
chr7 (25-63)||(12422352-12422390)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 37704916 - 37704626
Alignment:
Q  24 acttgttataattaaataacttaaatgacgtaagtgatacgnnnnnnnnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgc 123  Q
    |||||||||||||||||||||||||||||| ||||||||||                ||||||||||||||||||||||||||||||| |||||||||||    
T  37704916 acttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgc 37704817  T
Q  124 tctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704816 tctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactca 37704717  T
Q  224 ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704716 ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtc 37704626  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 122 - 310
Target Start/End: Complemental strand, 37699349 - 37699152
Alignment:
Q  122 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 215  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  216 attactcactgtgattgctacttaaatgaatttgttatc---ttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct 310  Q
    |||||||| | ||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  37699249 attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtct 37699152  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 37437823 - 37437696
Alignment:
Q  182 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatc---ttatcacaacttgaaataagattc 278  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||   ||||||||||||| ||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc 37437724  T
Q  279 caactttcgtgctaattacgttcaaaaagtct 310  Q
    |||||    |||||||||||||| ||||||||    
T  37437723 caact----tgctaattacgttcgaaaagtct 37437696  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 37698864 - 37698806
Alignment:
Q  238 taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaatta 296  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37698864 taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaatta 37698806  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  27 tgttataattaaataacttaaatgacgtaagtgatac 63  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 30384296 - 30384256
Alignment:
Q  24 acttgttataattaaataacttaaatgacgtaagtgatacg 64  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  30384296 acttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 122 - 310
Target Start/End: Original strand, 16840857 - 16841060
Alignment:
Q  122 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 211  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  212 gcacattactcactgtgattgctacttaaatgaatttgttatct------tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaa 305  Q
    ||| |||| ||| |||||||| ||||||||||||||||||||||      |||||||||||| |||||||||||||| || |||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaac-ttagtgctaattacgttcaaaa 16841055  T
Q  306 agtct 310  Q
    |||||    
T  16841056 agtct 16841060  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 31095130 - 31095092
Alignment:
Q  24 acttgttataattaaataacttaaatgacgtaagtgata 62  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31095130 acttgttataattaaataacttaaaggacgtaagtgata 31095092  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 17411127 - 17411089
Alignment:
Q  24 acttgttataattaaataacttaaatgacgtaagtgata 62  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  17411127 acttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 196257 - 196287
Alignment:
Q  33 aattaaataacttaaatgacgtaagtgatac 63  Q
    |||||||||||||||||||||||||||||||    
T  196257 aattaaataacttaaatgacgtaagtgatac 196287  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 18080638 - 18080600
Alignment:
Q  24 acttgttataattaaataacttaaatgacgtaagtgata 62  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  18080638 acttattacaattaaataacttaaatgacgtaagtgata 18080600  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  25 cttgttataattaaataacttaaatgacgtaagtgatac 63  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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