View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7744_low_8 (Length: 295)
Name: NF7744_low_8
Description: NF7744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7744_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 9303518 - 9303418
Alignment:
| Q |
189 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacaacatcaccaaaaccagtcaaccaaccacacaaagcaataacaccaa |
288 |
Q |
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| T |
9303518 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacatcaccaccaaaaccagtcaaccaaccacacaaagcaataacatcaa |
9303419 |
T |
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| Q |
289 |
a |
289 |
Q |
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| T |
9303418 |
a |
9303418 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9303695 - 9303619
Alignment:
| Q |
1 |
aaaacacaaggaaagctgccaaattttgcatcaacc-taattccaaaccttgtctgataccatcataaaccagtaat |
76 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9303695 |
aaaacacaaggaaagctgccaaattttgcatcaaccctaattccaaaccttgtctgataccatcataaaccagtaat |
9303619 |
T |
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