View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_high_10 (Length: 467)

Name: NF7745_high_10
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_high_10
NF7745_high_10
[»] chr3 (3 HSPs)
chr3 (2-462)||(22760543-22761003)
chr3 (2-197)||(48408074-48408269)
chr3 (2-197)||(48408613-48408808)
[»] chr7 (1 HSPs)
chr7 (2-462)||(42300283-42300747)
[»] scaffold0511 (1 HSPs)
scaffold0511 (147-462)||(1418-1734)
[»] chr6 (2 HSPs)
chr6 (147-462)||(18317434-18317750)
chr6 (2-47)||(18322971-18323016)
[»] chr4 (2 HSPs)
chr4 (324-459)||(56537076-56537212)
chr4 (139-194)||(42826855-42826910)
[»] chr5 (2 HSPs)
chr5 (198-285)||(2085530-2085617)
chr5 (324-451)||(42465432-42465561)
[»] chr1 (1 HSPs)
chr1 (392-459)||(48213492-48213560)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 462
Target Start/End: Original strand, 22760543 - 22761003
Alignment:
Q  2 ggtttaataagttataacttttatagaacaaaaaggactaaggattaactccaaaagaactgtcatgggcaaagaaagcaaggaagaatgacagaagaat 101  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||  ||||  ||| |||| ||||| | |||||| ||| | || ||||||||  |||    
T  22760543 ggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccgtaagtactggcatggtccaagaaaccaatgcagcatgacagattaat 22760642  T
Q  102 ggggataaagatcctaaacctaaagtggnnnnnnnnngttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgcgctt 201  Q
    |   |||  |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22760643 gctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgcgctt 22760742  T
Q  202 aaagggactttaccaaatccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22760743 aaagggactttaccaaatccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctga 22760842  T
Q  302 attttgtgtttttctaaacgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaat 401  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  22760843 attttgtgtttttctaaacgtaacgcaagaccgcagcccggccactaaattgaagattttgcaattctaggaaacagaaaaaattaaagtttctaacaat 22760942  T
Q  402 taaatcatttaatcatatttgacatctttgtcaagaaaagtataaatctcatattcttcga 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22760943 taaatcatttaatcatatttgacatctttgtcaagaaaagtataaatctcacattcttcga 22761003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 48408074 - 48408269
Alignment:
Q  2 ggtttaataagttataacttttatagaacaaaaaggactaaggattaactccaaaagaactgtcatgggcaaagaaagcaaggaagaatgacagaagaat 101  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||||| |  |||   ||| |||| ||||| | |||||| ||| | || ||||||||  ||     
T  48408074 ggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcggcaaggactgacatggtccaagaaaccaatgcagtatgacagattaag 48408173  T
Q  102 ggggataaagatcctaaacctaaagtggnnnnnnnnngttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgc 197  Q
    |   |||  |||||||||||||||||||         |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  48408174 gctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtaccagctgaagaaatatccaataaaaatttgcagtctttataaatgc 48408269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 48408613 - 48408808
Alignment:
Q  2 ggtttaataagttataacttttatagaacaaaaaggactaaggattaactccaaaagaactgtcatgggcaaagaaagcaaggaagaatgacagaagaat 101  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||||| |  |||   ||| |||| ||||| | |||||| ||| | || ||||||||  ||     
T  48408613 ggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcggcaaggactgacatggtccaagaaaccaatgcagtatgacagattaag 48408712  T
Q  102 ggggataaagatcctaaacctaaagtggnnnnnnnnngttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgc 197  Q
    |   |||  |||||||||||||||||||         |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  48408713 gctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtaccagctgaagaaatatccaataaaaatttgcagtctttataaatgc 48408808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 462
Target Start/End: Original strand, 42300283 - 42300747
Alignment:
Q  2 ggtttaataagttataacttttatagaacaaaaaggactaaggattaactccaaaagaactgtcatgggcaaagaaagcaaggaagaatgacagaagaat 101  Q
    ||||||||||||| ||||||||| ||| ||||||| ||||||||||  |||   ||| |||| ||||| | |||||| ||| | || ||||||||  ||     
T  42300283 ggtttaataagttttaacttttaaagaccaaaaagaactaaggattgcctcagcaagtactgacatggtccaagaaaccaatgcagtatgacagattaag 42300382  T
Q  102 ggggataaagatcctaaacctaaagtggnnnnnnnnngttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgcgctt 201  Q
    |   |||| |||||||||| ||||||||         |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  42300383 gctcataaggatcctaaacttaaagtggtaagtaaaagttagatgaggtaccaactgaagaaatatccaacaaaaatttgcaatctttataaatgcgctt 42300482  T
Q  202 aaagggactttaccaaatccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctga 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  42300483 aaagggactttaccaaatccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcatgaacgtaatttgctga 42300582  T
Q  302 a-ttttgtgtttttctaaacgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaa--aaaattaaattttctcac 398  Q
    | ||||| |||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||  ||||||||| ||||||||    
T  42300583 atttttgcgtttttctgaacgtaatgcaagactgcagcccgaccactgaatggaagattttgcaattctaggaaacaaaaagaaaattaaagtttctcac 42300682  T
Q  399 aattaaat-catttaatcatatttgacatctttgtcaagaaaagtataaatctcatattcttcga 462  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  42300683 aattaaatccatttaagcatatttgacatctttgtcaagaaaagtataaacctcacattcttcga 42300747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 147 - 462
Target Start/End: Complemental strand, 1734 - 1418
Alignment:
Q  147 aggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgcgcttaaagggactttaccaaatccacaggaatcaagtatcataaaccat 246  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  1734 aggtgccaactgaagatatatccaacaaaaatttgcattctttataaatgcgcataaagggactttaccaaatccacatgaatcaagtatcataaatcat 1635  T
Q  247 ttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaa-ttttgtgtttttctaaacgtaatgcaagaccgcagcccgacca 345  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||| ||||||| ||||||||||| ||||||||    
T  1634 ttatcaagtttttcatgtatttcctttcattcagctcctgaatgtaatttgttgaatttttgcgtttttctgaacgtaacgcaagaccgcaacccgacca 1535  T
Q  346 ctaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatcatatttgacatctttgtcaagaaaagtat 444  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1534 ctaaattgaagattttgcaattctagg-aacagaaaaaattaaagtttctcacaattaaatccatttaatcatatttgacatctttgtcaagaaaagtat 1436  T
Q  445 aaatctcatattcttcga 462  Q
    | |||||| |||||||||    
T  1435 atatctcacattcttcga 1418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 147 - 462
Target Start/End: Complemental strand, 18317750 - 18317434
Alignment:
Q  147 aggtaccagctgaagatatatccaacaaaaatttgcattctttataaatgcgcttaaagggactttaccaaatccacaggaatcaagtatcataaaccat 246  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  18317750 aggtgccaactgaagatatatccaacaaaaatttgcattctttataaatgcgcataaagggactttaccaaatccacatgaatcaagtatcataaatcat 18317651  T
Q  247 ttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaa-ttttgtgtttttctaaacgtaatgcaagaccgcagcccgacca 345  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||| ||||||| ||||||||||| ||||||||    
T  18317650 ttatcaagtttttcatgtatttcctttcattcagctcctgaatgtaatttgttgaatttttgcgtttttctgaacgtaacgcaagaccgcaacccgacca 18317551  T
Q  346 ctaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatcatatttgacatctttgtcaagaaaagtat 444  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18317550 ctaaattgaagattttgcaattctagg-aacagaaaaaattaaagtttctcacaattaaatccatttaatcatatttgacatctttgtcaagaaaagtat 18317452  T
Q  445 aaatctcatattcttcga 462  Q
    | |||||| |||||||||    
T  18317451 atatctcacattcttcga 18317434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 18323016 - 18322971
Alignment:
Q  2 ggtttaataagttataacttttatagaacaaaaaggactaaggatt 47  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  18323016 ggtttaataagttctaacttttatagaccaaaaaggactaaggatt 18322971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 324 - 459
Target Start/End: Complemental strand, 56537212 - 56537076
Alignment:
Q  324 atgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatcatatttg 422  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  56537212 atgcaagaccgcagcccgaccactgaatggaagattttgcagttctaggaaacagaaaaaattaaagtttctcacaattaaatccatttaatcatatttg 56537113  T
Q  423 acatctttgtcaagaaaagtataaatctcatattctt 459  Q
    |||||||||||||||||||||||||||||| ||||||    
T  56537112 acatctttgtcaagaaaagtataaatctcacattctt 56537076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 42826910 - 42826855
Alignment:
Q  139 gttagatgaggtaccagctgaagatatatccaacaaaaatttgcattctttataaa 194  Q
    |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||    
T  42826910 gttagatgaggtaccagctgaagaaatatccaataaaaatttacagtctttataaa 42826855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 2085530 - 2085617
Alignment:
Q  198 gcttaaagggactttaccaaatccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcct 285  Q
    ||||||||| || ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2085530 gcttaaaggcacattaccgaatccacacgaatcaagtctcataaaccatttatcaagtttttcatgtctttcctttctttcagctcct 2085617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 42465561 - 42465432
Alignment:
Q  324 atgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaat-tttctcacaattaaat-catttaatcatattt 421  Q
    |||||||| ||||||||||||||  ||| |||||||||||| ||||||| ||| ||||||| |  |  |||||| ||||||||| ||| |||| ||||||    
T  42465561 atgcaagatcgcagcccgaccacagaatggaagattttgcagttctagggaaccgaaaaaaatgcacgtttctcccaattaaattcatctaattatattt 42465462  T
Q  422 gacatctttgtcaagaaaagtataaatctc 451  Q
    |||||| |||||||||||||||||||||||    
T  42465461 gacatcattgtcaagaaaagtataaatctc 42465432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 48213492 - 48213560
Alignment:
Q  392 ttctcacaattaaatc-atttaatcatatttgacatctttgtcaagaaaagtataaatctcatattctt 459  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48213492 ttctcacagttaaatccatttaatcatatttgacatctttgtcaagaaaagtataaatctcacattctt 48213560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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