View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_11 (Length: 467)
Name: NF7745_high_11
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 28411560 - 28411087
Alignment:
| Q |
1 |
cttgtatacaggttaggcatgcccaaggagttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatgannnnnnngatgcaaacctaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28411560 |
cttgtatacaggttaggcatgcccaaggagttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatgatttttttgatgcaaacctaac |
28411461 |
T |
|
| Q |
101 |
tcctcttggatggcagcaggtagttgcttttccaacttttttgaatgtcatgctgtcaa-----------tggnnnnnnnattatgcggaattcctctct |
189 |
Q |
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| T |
28411460 |
tcctcttggatggcagcaggtagttgcttttccaacttttttgaatgtcatgctgtcaagtatttgtcaatggtttttgtattatgcggaattcctctct |
28411361 |
T |
|
| Q |
190 |
gaagtgatcacgatgatcaaatgatattgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411360 |
gaagtgatcacgatgatcaaatgatattgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaat |
28411261 |
T |
|
| Q |
290 |
tgttgataacaatcttgttctgcatacatctatctcttgctagtatttcctgctcaatgtagctctctcatatatgtcatcgtctgacatcgatacatgc |
389 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28411260 |
tgtcgataacaatcttgttctgcatacatctatctcttgctagtatttcctgctcaatgtagcactctcatatatgtcatcgtctgacatcgatacatgc |
28411161 |
T |
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| Q |
390 |
ggttatactcaaatatttccactttttcaaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
463 |
Q |
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| T |
28411160 |
ggttatactcaaatatttccactttttcaaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
28411087 |
T |
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Back To:
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 52013195 - 52013273
Alignment:
| Q |
1 |
cttgtatacaggttaggcatgcccaaggagttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatga |
79 |
Q |
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||||||| |||||||| ||||||||||| |||| ||||| |||||||| ||||||| |||||| |||||||||||||| |
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| T |
52013195 |
cttgtatgcaggttagacatgcccaagggtttcacaatgttgaaggagacaagaaccctgatgcgtacttatcttatga |
52013273 |
T |
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