View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_12 (Length: 413)
Name: NF7745_high_12
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 15418677 - 15419074
Alignment:
| Q |
1 |
agtggtcacaatccaaattcagtataaaagggccattggacaaaatggctgaggctcgaaccatggagttcatggctcctgctttcttgttatggtcaaa |
100 |
Q |
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| T |
15418677 |
agtggtcacaatccaaattcagtataaaagggccattggacaaaatggctgaggctcgaaccatggagttcatggctcctgctttcttgttatggtcaaa |
15418776 |
T |
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| Q |
101 |
cccgggccgcttctctcgagaaacatatgcgaacattggaactctaatgtctacgcctgtaaaatctagacttttctcatctggatggcccattataggg |
200 |
Q |
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| T |
15418777 |
cccgggccgcttctctcgagaaacatatgcgaacattggaactctaatgtctacgcctgtgaaatctagacttttctcatctggatggcccattataggg |
15418876 |
T |
|
| Q |
201 |
tcatgctctggtaccttactcatcacctgttaagttgaaaacatgacaatcacaatttactttaaacaaacaccaaatttcaatatgaacaaattttgca |
300 |
Q |
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| T |
15418877 |
tcatgctctggtaccttactcatcacctgttaagttgaaaacatgacaatcacaatttactttaaacaaacaccaaatttcaatatgaacaaattttgca |
15418976 |
T |
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| Q |
301 |
ggactaaaactaaaacattacgaaccnnnnnnnnnnnnnntttgatggatgagaggagaaattaaatggtacctgcaagattccagcatggtcacctt |
398 |
Q |
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| T |
15418977 |
ggactaaaacgaaaacattacgaacaaaaaacaaaaaaaatttgatggatgagaggagaaattaaatggtacctgcaagattccagcatggtcacctt |
15419074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 31748464 - 31748497
Alignment:
| Q |
277 |
atttcaatatgaacaaattttgcaggactaaaac |
310 |
Q |
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| T |
31748464 |
atttcaatatgaacaaattttgcaggactaaaac |
31748497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 24640675 - 24640709
Alignment:
| Q |
276 |
aatttcaatatgaacaaattttgcaggactaaaac |
310 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
24640675 |
aatttcaatatgaacaaattttgcagaactaaaac |
24640709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 52490092 - 52490058
Alignment:
| Q |
276 |
aatttcaatatgaacaaattttgcaggactaaaac |
310 |
Q |
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| T |
52490092 |
aatttcaatatgaacaaattttgcagaactaaaac |
52490058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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