View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_16 (Length: 372)
Name: NF7745_high_16
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 33398056 - 33397715
Alignment:
| Q |
24 |
aaagaaacacaatcgaatcgaatcgaatcgaagagttagggttaaggagaagaaagaaatgggttccagaagaagaattgcaggagcaggtttacaggat |
123 |
Q |
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| T |
33398056 |
aaagaaacacaatcgaca-gaatcgaatcgaagagttagggttaaggagaagaaagaaatgggttccagaaaaagaattgcaggagcaggtttacaggat |
33397958 |
T |
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| Q |
124 |
gattgctgggaatatgtgttatccaaactccttaacaacctcaacgttgagaacagtaatcattacttagagactctatcccttgtgtccaaacaactac |
223 |
Q |
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| T |
33397957 |
gattgctgggaatatgtgttatccaaactccttaacaacctcaacgttgagaaccgtaatcattacttagagactctatcccttgtgtccaaacaactac |
33397858 |
T |
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| Q |
224 |
tcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaatccatcatccttctctcgtctcttccaaaggttcccaaatcttacttcacttga |
323 |
Q |
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| T |
33397857 |
tcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaatccatcatccttctctcgtctcttccaaaggttcccaaatcttacttcacttga |
33397758 |
T |
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| Q |
324 |
cctctcgtgcttccgcggtgacacaaacattcttctcactcga |
366 |
Q |
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| T |
33397757 |
cctctcgtgcttccgcggtgacacaaacattcttctctctcga |
33397715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 33707742 - 33707864
Alignment:
| Q |
189 |
cttagagactctatcccttgtgtccaaacaactactcgacgtaacaaaccgttctgtgcattccgtcacattaatctacaatccatcatccttctctcgt |
288 |
Q |
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| T |
33707742 |
cttagagactctatcccttgtatccaaacaattactctccgtcaccaacagttctatatattccttgagattaatatacaatacattaccactctctcgc |
33707841 |
T |
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| Q |
289 |
ctcttccaaaggttcccaaatct |
311 |
Q |
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| T |
33707842 |
ctcttccaaaggttcccaaatct |
33707864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 37579466 - 37579515
Alignment:
| Q |
103 |
gcaggagcaggtttacaggatgattgctgggaatatgtgttatccaaact |
152 |
Q |
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| T |
37579466 |
gcaggaggtggtttaccggacgattgctgggaatatgtgatatccaaact |
37579515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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