View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_high_19 (Length: 351)

Name: NF7745_high_19
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_high_19
NF7745_high_19
[»] chr6 (11 HSPs)
chr6 (1-335)||(31230048-31230382)
chr6 (1-285)||(31214499-31214781)
chr6 (63-223)||(31145101-31145261)
chr6 (63-230)||(31171407-31171574)
chr6 (63-256)||(30955577-30955770)
chr6 (63-223)||(31189159-31189319)
chr6 (63-226)||(31224830-31224993)
chr6 (75-223)||(31200966-31201114)
chr6 (63-256)||(30945317-30945510)
chr6 (63-227)||(30961325-30961489)
chr6 (61-230)||(30992805-30992974)
[»] chr8 (1 HSPs)
chr8 (86-203)||(44036028-44036145)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 31230048 - 31230382
Alignment:
Q  1 attgggtatacaagaatcttgatctacgcaatgatttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230048 attgggtatacaagaatcttgatctacgcaatgatttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtagg 31230147  T
Q  101 tttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaattctttggaaataccaccaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  31230148 tttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacaagaattgtttggaaataccaccaaaa 31230247  T
Q  201 cctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattttggggtaaatgttccacactgcattatttatcatatttgttgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230248 cctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattttggggtaaatgttccacactgcattatttatcatatttgttgta 31230347  T
Q  301 tattctaatatcacattgtaaagcaagtggatctt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  31230348 tattctaatatcacattgtaaagcaagtggatctt 31230382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 31214499 - 31214781
Alignment:
Q  1 attgggtatacaagaatcttgatctacgcaatgatttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtagg 100  Q
    ||||||||||||| |   ||||||||  || |||||||||||  || |||||||||| | |   ||| ||||| || |||| |||| ||||||| |||||    
T  31214499 attgggtatacaaaaggtttgatctagacactgatttgagacacgatgaagtgattgccac---agatgatgacatcgcaaagagaatgaccatagtagg 31214595  T
Q  101 tttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaattctttggaaataccaccaaaa 200  Q
     |||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||||   || ||| ||||||||||| ||||||    
T  31214596 attatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaaggcaatgtgagttcattggaaatacccccaaaa 31214695  T
Q  201 cctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt-tggggtaaatgttccacactgcattattt 285  Q
    |||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| ||  |||| | ||||||||||||||||||    
T  31214696 cctattctttcttctcctactagaccagtaccaaaatcgtcagcttcatgaaatttatgttgtaagtcttccacactgcattattt 31214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 31145261 - 31145101
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||    
T  31145261 gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgt 31145162  T
Q  163 tagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactag 223  Q
    ||||||  |||| ||||||  | ||||||||||| |||||  | |||||||||||||||||    
T  31145161 tagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcctactag 31145101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 31171574 - 31171407
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  31171574 gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt 31171475  T
Q  163 tagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactagatcagta 230  Q
    ||||||  |  | ||||||  ||||||| |||||||||||  | | ||| ||||| ||||||||||||    
T  31171474 tagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccactagatcagta 31171407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 256
Target Start/End: Original strand, 30955577 - 30955770
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    |||||| |||| |||||||   || |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  30955577 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 30955676  T
Q  163 tagaaggcaacacgaat-tctttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt 256  Q
    | ||||| | || |||| || || |||||||||||||||||| |  |||||||||||||||||||| ||   ||||| ||| |||| ||||||||    
T  30955677 tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaattt 30955770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 31189319 - 31189159
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    |||||||| || |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  31189319 gaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt 31189220  T
Q  163 tagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactag 223  Q
    ||||||  |||| |||||   | ||||||||||| |||||   ||||||||| ||||||||    
T  31189219 tagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag 31189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 31224830 - 31224993
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    ||||||||| | |||||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||| ||||||||||||||    
T  31224830 gaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgt 31224929  T
Q  163 tagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactagatc 226  Q
    |||| |  | || |||||| |||||||| |||||||||||  | ||||||||||| ||||||||    
T  31224930 tagatgttagcatgaattcgttggaaatgccaccaaaaccattgctttcttctccgactagatc 31224993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 31201114 - 31200966
Alignment:
Q  75 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 174  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  ||||    
T  31201114 attgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaaca 31201015  T
Q  175 cgaattctttggaaataccaccaaaacctattctttcttctcctactag 223  Q
     |||||   | ||||||||||| |||||   ||||||||| ||||||||    
T  31201014 tgaatttacttgaaataccacctaaaccatatctttcttcacctactag 31200966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 256
Target Start/End: Original strand, 30945317 - 30945510
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    |||||| |||| |||||||   || |||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  30945317 gaagaaaatgagattgcaaaaggaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 30945416  T
Q  163 tagaaggcaacacgaat-tctttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt 256  Q
    | ||||| | || |||| || || |||||||||||||||||| |  ||||||||||||| |||||| ||   ||||| ||| |||| ||||||||    
T  30945417 tggaaggtagcatgaatatcctt-gaaataccaccaaaacctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaattt 30945510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 30961325 - 30961489
Alignment:
Q  63 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 162  Q
    |||||| |||| ||||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||||  || || |||||||||| |||  |||||||||    
T  30961325 gaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgt 30961424  T
Q  163 tagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactagatca 227  Q
    ||||||  |||| |||||| ||||||||||||||||||||  | ||||| |||||||||||||||    
T  30961425 tagaagttaacatgaattcattggaaataccaccaaaaccattgctttcgtctcctactagatca 30961489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 30992805 - 30992974
Alignment:
Q  61 cggaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaat 160  Q
    ||||||||||||| ||||||| |||  ||||||||||  |||| ||||| |||||||||||||| ||||  ||||| |||||||||| |||  |||||||    
T  30992805 cggaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaat 30992904  T
Q  161 gttagaaggcaacacgaattctttggaaataccaccaaaacctattctttcttctcctactagatcagta 230  Q
    ||||||||   |||  ||||| ||||||||||||||||||||  | ||||| ||||||||||||||||||    
T  30992905 gttagaagttgacattaattcgttggaaataccaccaaaaccattgctttcgtctcctactagatcagta 30992974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 44036028 - 44036145
Alignment:
Q  86 attgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaattctttg 185  Q
    |||||| || || ||||| ||||||||||||||| |||| | | ||||||| ||||| |||| ||||||||| ||||| || || | || | ||||||||    
T  44036028 attgactatggttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatggattctttg 44036127  T
Q  186 gaaataccaccaaaacct 203  Q
    ||||| ||||||||||||    
T  44036128 gaaatgccaccaaaacct 44036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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